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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2wh5:A (2.6) BS01 ST9 ? GO:0000062 ... Q8NC06 N/A
    2 2wh5:B (2.6) BS01 ST9 ? GO:0000062 ... Q8NC06 N/A
    3 2wh5:C (2.6) BS01 ST9 ? GO:0000062 ... Q8NC06 N/A
    4 2wh5:D (2.6) BS01 ST9 ? GO:0000062 ... Q8NC06 N/A
    5 2wh5:E (2.6) BS01 ST9 ? GO:0000062 ... Q8NC06 N/A
    6 2wh5:F (2.6) BS02 ST9 ? GO:0000062 ... Q8NC06 N/A
    7 3whc:A (2.2) BS01 ST9 ? GO:0000976 ... P94548 24356978
    8 3whc:A (2.2) BS02 ST9 ? GO:0000976 ... P94548 24356978
    9 3whc:B (2.2) BS01 ST9 ? GO:0000976 ... P94548 24356978
    10 3whc:B (2.2) BS02 ST9 ? GO:0000976 ... P94548 24356978
    11 3whc:C (2.2) BS01 ST9 ? GO:0000976 ... P94548 24356978
    12 3whc:C (2.2) BS02 ST9 ? GO:0000976 ... P94548 24356978
    13 3whc:D (2.2) BS01 ST9 ? GO:0000976 ... P94548 24356978
    14 3whc:D (2.2) BS02 ST9 ? GO:0000976 ... P94548 24356978
    15 3whc:E (2.2) BS01 ST9 ? GO:0000976 ... P94548 24356978
    16 3whc:E (2.2) BS02 ST9 ? GO:0000976 ... P94548 24356978
    17 3whc:F (2.2) BS01 ST9 ? GO:0000976 ... P94548 24356978
    18 3whc:F (2.2) BS02 ST9 ? GO:0000976 ... P94548 24356978
    19 4ymk:A (2.605) BS03 ST9 1.14.19.1 GO:0004768 ... P13516 26098370
    20 4ymk:D (2.605) BS03 ST9 1.14.19.1 GO:0004768 ... P13516 26098370
    21 4zyo:A (3.25) BS03 ST9 1.14.19.1 GO:0016717 ... O00767 26098317
    22 6jzz:A (3.011) BS01 ST9 1.2.1.80 GO:0016491 ... Q54765 32251275
    23 6ksa:A (1.768) BS02 ST9 1.3.8.1
    1.3.8.7
    1.3.8.8    		 GO:0004466 ... Q3L887 32601219
    24 6ksa:B (1.768) BS03 ST9 1.3.8.1
    1.3.8.7
    1.3.8.8    		 GO:0004466 ... Q3L887 32601219
    25 6kse:A (1.998) BS02 ST9 1.3.8.1
    1.3.8.7
    1.3.8.8    		 GO:0004466 ... O53666 32601219
    26 6kse:B (1.998) BS03 ST9 1.3.8.1
    1.3.8.7
    1.3.8.8    		 GO:0004466 ... O53666 32601219
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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