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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1009 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1f6n:M (2.8) BS08 SPO ? GO:0009772 ... P0C0Y9 11284681
    2 1fnp:M (2.6) BS08 SPO ? GO:0009772 ... P0C0Y9 11284681
    3 1fnq:M (2.6) BS08 SPO ? GO:0009772 ... P0C0Y9 11284681
    4 1jgw:M (2.8) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    5 1jgx:M (3.01) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    6 1jgy:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    7 1jgz:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    8 1jh0:M (3.5) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    9 1kby:M (2.5) BS08 SPO ? GO:0009772 ... P0C0Y9 16228547
    10 1m3x:M (2.55) BS08 SPO ? GO:0009772 ... P0C0Y9 12167672
    11 1pcr:M (2.65) BS08 SPO ? GO:0009772 ... P0C0Y9 7866744
    12 1rgn:M (2.8) BS08 SPO ? GO:0009772 ... P0C0Y9 15130469
    13 1rvj:M (2.75) BS09 SPO ? GO:0009772 ... P0C0Y9 15062092
    14 1ry5:M (2.1) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    15 1rzh:M (1.8) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    16 1rzz:M (2.4) BS09 SPO ? GO:0009772 ... P0C0Y9 15062092
    17 1rzz:S (2.4) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    18 1s00:M (2.6) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    19 1s00:S (2.6) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    20 1yf6:M (2.25) BS08 SPO ? GO:0009772 ... P0C0Y9 15865437
    21 1yst:M (3.0) BS07 SPO ? GO:0009772 ... P0C0Y9 15299304
    22 2j8c:M (1.87) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    23 2j8d:M (2.07) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    24 2uws:M (2.9) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    25 2uwt:M (2.5) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    26 2uwu:M (2.04) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    27 2uwv:M (2.13) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    28 2uww:M (2.05) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    29 2ux3:M (2.5) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    30 2ux4:M (2.51) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    31 2ux5:M (2.21) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    32 2uxj:M (2.25) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    33 2uxk:M (2.31) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    34 2uxl:M (2.88) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    35 2uxm:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 17570397
    36 3i4d:M (2.01) BS10 SPO ? GO:0009772 ... P0C0Y9 N/A
    37 4h99:M (2.97) BS08 SPO ? GO:0009772 ... P0C0Y9 N/A
    38 4h9l:M (2.77) BS08 SPO ? GO:0009772 ... P0C0Y9 N/A
    39 4hbh:M (2.93) BS08 SPO ? GO:0009772 ... P0C0Y9 N/A
    40 4hbj:M (2.74) BS08 SPO ? GO:0009772 ... P0C0Y9 N/A
    41 4in5:M (2.2) BS08 SPO ? GO:0009772 ... Q3J1A6 23480277
    42 4in6:M (2.7) BS08 SPO ? GO:0009772 ... Q3J1A6 23480277
    43 4in7:M (2.85) BS07 SPO ? GO:0009772 ... P0C0Y9 23480277
    44 4n7k:M (2.85) BS08 SPO ? GO:0009772 ... P0C0Y9 24316146
    45 4n7l:M (2.85) BS08 SPO ? GO:0009772 ... Q3J1A6 24316146
    46 4v9g:AM (7.78) BS08 SPO ? GO:0009772 ... P0C0Y9 24131108
    47 7ddq:A (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    48 7ddq:B (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    49 7ddq:D (2.84) BS01 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    50 7ddq:E (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    51 7ddq:F (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    52 7ddq:G (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    53 7ddq:I (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    54 7ddq:J (2.84) BS01 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    55 7ddq:K (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    56 7ddq:M (2.84) BS08 SPO ? GO:0009772 ... A0A2T4JIN0 34134992
    57 7ddq:N (2.84) BS01 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    58 7ddq:O (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    59 7ddq:R (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    60 7ddq:S (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    61 7ddq:T (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIL7 34134992
    62 7ddq:X (2.84) BS01 SPO ? GO:0016020 ... A0A2T4JIP3 34134992
    63 7ddq:a (2.84) BS05 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    64 7ddq:b (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    65 7ddq:b (2.84) BS05 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    66 7ddq:b (2.84) BS06 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    67 7ddq:d (2.84) BS01 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    68 7ddq:d (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    69 7ddq:e (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    70 7ddq:f (2.84) BS01 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    71 7ddq:f (2.84) BS04 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    72 7ddq:g (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    73 7ddq:i (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    74 7ddq:i (2.84) BS04 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    75 7ddq:j (2.84) BS01 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    76 7ddq:j (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    77 7ddq:k (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    78 7ddq:k (2.84) BS04 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    79 7ddq:n (2.84) BS01 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    80 7ddq:n (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    81 7ddq:o (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    82 7ddq:o (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    83 7ddq:r (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    84 7ddq:r (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    85 7ddq:s (2.84) BS03 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    86 7ddq:s (2.84) BS04 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    87 7ddq:t (2.84) BS02 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    88 7ddq:u (2.84) BS01 SPO ? GO:0005886 ... A0A2T4JIR4 34134992
    89 7f0l:1 (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    90 7f0l:1 (2.94) BS03 SPO ? GO:0005886 ... Q3J1A4 34728609
    91 7f0l:1 (2.94) BS04 SPO ? GO:0005886 ... Q3J1A4 34728609
    92 7f0l:2 (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    93 7f0l:2 (2.94) BS03 SPO ? GO:0005886 ... Q3J1A3 34728609
    94 7f0l:3 (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    95 7f0l:3 (2.94) BS02 SPO ? GO:0005886 ... Q3J1A4 34728609
    96 7f0l:3 (2.94) BS05 SPO ? GO:0005886 ... Q3J1A4 34728609
    97 7f0l:4 (2.94) BS01 SPO ? GO:0005886 ... Q3J1A3 34728609
    98 7f0l:4 (2.94) BS03 SPO ? GO:0005886 ... Q3J1A3 34728609
    99 7f0l:5 (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    100 7f0l:5 (2.94) BS03 SPO ? GO:0005886 ... Q3J1A4 34728609
    101 7f0l:6 (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    102 7f0l:6 (2.94) BS03 SPO ? GO:0005886 ... Q3J1A3 34728609
    103 7f0l:7 (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    104 7f0l:8 (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    105 7f0l:A (2.94) BS04 SPO ? GO:0005886 ... Q3J1A4 34728609
    106 7f0l:A (2.94) BS05 SPO ? GO:0005886 ... Q3J1A4 34728609
    107 7f0l:B (2.94) BS04 SPO ? GO:0005886 ... Q3J1A3 34728609
    108 7f0l:D (2.94) BS02 SPO ? GO:0005886 ... Q3J1A4 34728609
    109 7f0l:D (2.94) BS05 SPO ? GO:0005886 ... Q3J1A4 34728609
    110 7f0l:D (2.94) BS06 SPO ? GO:0005886 ... Q3J1A4 34728609
    111 7f0l:E (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    112 7f0l:E (2.94) BS03 SPO ? GO:0005886 ... Q3J1A3 34728609
    113 7f0l:F (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    114 7f0l:F (2.94) BS03 SPO ? GO:0005886 ... Q3J1A4 34728609
    115 7f0l:F (2.94) BS05 SPO ? GO:0005886 ... Q3J1A4 34728609
    116 7f0l:G (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    117 7f0l:I (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    118 7f0l:I (2.94) BS02 SPO ? GO:0005886 ... Q3J1A4 34728609
    119 7f0l:I (2.94) BS06 SPO ? GO:0005886 ... Q3J1A4 34728609
    120 7f0l:J (2.94) BS01 SPO ? GO:0005886 ... Q3J1A3 34728609
    121 7f0l:J (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    122 7f0l:K (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    123 7f0l:K (2.94) BS03 SPO ? GO:0005886 ... Q3J1A4 34728609
    124 7f0l:K (2.94) BS04 SPO ? GO:0005886 ... Q3J1A4 34728609
    125 7f0l:K (2.94) BS07 SPO ? GO:0005886 ... Q3J1A4 34728609
    126 7f0l:M (2.94) BS09 SPO ? GO:0009772 ... Q3J1A6 34728609
    127 7f0l:N (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    128 7f0l:N (2.94) BS03 SPO ? GO:0005886 ... Q3J1A3 34728609
    129 7f0l:O (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    130 7f0l:O (2.94) BS03 SPO ? GO:0005886 ... Q3J1A4 34728609
    131 7f0l:O (2.94) BS04 SPO ? GO:0005886 ... Q3J1A4 34728609
    132 7f0l:P (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    133 7f0l:P (2.94) BS03 SPO ? GO:0005886 ... Q3J1A3 34728609
    134 7f0l:Q (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    135 7f0l:Q (2.94) BS02 SPO ? GO:0005886 ... Q3J1A4 34728609
    136 7f0l:Q (2.94) BS06 SPO ? GO:0005886 ... Q3J1A4 34728609
    137 7f0l:R (2.94) BS01 SPO ? GO:0005886 ... Q3J1A3 34728609
    138 7f0l:R (2.94) BS03 SPO ? GO:0005886 ... Q3J1A3 34728609
    139 7f0l:S (2.94) BS02 SPO ? GO:0005886 ... Q3J1A4 34728609
    140 7f0l:S (2.94) BS03 SPO ? GO:0005886 ... Q3J1A4 34728609
    141 7f0l:S (2.94) BS06 SPO ? GO:0005886 ... Q3J1A4 34728609
    142 7f0l:T (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    143 7f0l:T (2.94) BS03 SPO ? GO:0005886 ... Q3J1A3 34728609
    144 7f0l:V (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    145 7f0l:V (2.94) BS03 SPO ? GO:0005886 ... Q3J1A4 34728609
    146 7f0l:V (2.94) BS04 SPO ? GO:0005886 ... Q3J1A4 34728609
    147 7f0l:W (2.94) BS01 SPO ? GO:0005886 ... Q3J1A3 34728609
    148 7f0l:W (2.94) BS03 SPO ? GO:0005886 ... Q3J1A3 34728609
    149 7f0l:X (2.94) BS02 SPO ? GO:0005886 ... P13402 34728609
    150 7f0l:Y (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    151 7f0l:Y (2.94) BS05 SPO ? GO:0005886 ... Q3J1A4 34728609
    152 7f0l:Z (2.94) BS01 SPO ? GO:0005886 ... Q3J1A3 34728609
    153 7f0l:Z (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    154 7mh3:M (2.3) BS08 SPO ? GO:0009772 ... Q3J1A6 34907018
    155 7mh4:M (2.48) BS08 SPO ? GO:0009772 ... Q3J1A6 34907018
    156 7mh5:M (2.85) BS08 SPO ? GO:0009772 ... Q3J1A6 34907018
    157 7mh8:M (2.75) BS08 SPO ? GO:0009772 ... Q3J1A6 34907018
    158 7mh9:M (3.1) BS08 SPO ? GO:0009772 ... Q3J1A6 34907018
    159 7mha:M (2.79) BS07 SPO ? GO:0009772 ... Q3J1A6 N/A
    160 7pil:AA (2.5) BS02 SPO ? GO:0005886 ... Q3J1A4 34590677
    161 7pil:AA (2.5) BS04 SPO ? GO:0005886 ... Q3J1A4 34590677
    162 7pil:AB (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    163 7pil:AB (2.5) BS03 SPO ? GO:0005886 ... Q3J1A4 34590677
    164 7pil:AB (2.5) BS04 SPO ? GO:0005886 ... Q3J1A4 34590677
    165 7pil:AB (2.5) BS05 SPO ? GO:0005886 ... Q3J1A4 34590677
    166 7pil:AC (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    167 7pil:AC (2.5) BS02 SPO ? GO:0005886 ... Q3J1A4 34590677
    168 7pil:AC (2.5) BS04 SPO ? GO:0005886 ... Q3J1A4 34590677
    169 7pil:AC (2.5) BS05 SPO ? GO:0005886 ... Q3J1A4 34590677
    170 7pil:AD (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    171 7pil:AD (2.5) BS02 SPO ? GO:0005886 ... Q3J1A4 34590677
    172 7pil:AD (2.5) BS04 SPO ? GO:0005886 ... Q3J1A4 34590677
    173 7pil:AD (2.5) BS06 SPO ? GO:0005886 ... Q3J1A4 34590677
    174 7pil:AE (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    175 7pil:AF (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    176 7pil:AF (2.5) BS02 SPO ? GO:0005886 ... Q3J1A4 34590677
    177 7pil:AF (2.5) BS04 SPO ? GO:0005886 ... Q3J1A4 34590677
    178 7pil:AF (2.5) BS05 SPO ? GO:0005886 ... Q3J1A4 34590677
    179 7pil:AG (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    180 7pil:AG (2.5) BS02 SPO ? GO:0005886 ... Q3J1A4 34590677
    181 7pil:AG (2.5) BS04 SPO ? GO:0005886 ... Q3J1A4 34590677
    182 7pil:AG (2.5) BS05 SPO ? GO:0005886 ... Q3J1A4 34590677
    183 7pil:AH (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    184 7pil:AH (2.5) BS04 SPO ? GO:0005886 ... Q3J1A4 34590677
    185 7pil:AI (2.5) BS02 SPO ? GO:0005886 ... Q3J1A4 34590677
    186 7pil:AI (2.5) BS03 SPO ? GO:0005886 ... Q3J1A4 34590677
    187 7pil:AJ (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    188 7pil:AJ (2.5) BS03 SPO ? GO:0005886 ... Q3J1A4 34590677
    189 7pil:AJ (2.5) BS04 SPO ? GO:0005886 ... Q3J1A4 34590677
    190 7pil:AJ (2.5) BS05 SPO ? GO:0005886 ... Q3J1A4 34590677
    191 7pil:AK (2.5) BS03 SPO ? GO:0005886 ... Q3J1A4 34590677
    192 7pil:AL (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    193 7pil:AL (2.5) BS03 SPO ? GO:0005886 ... Q3J1A4 34590677
    194 7pil:AL (2.5) BS04 SPO ? GO:0005886 ... Q3J1A4 34590677
    195 7pil:AM (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    196 7pil:AM (2.5) BS03 SPO ? GO:0005886 ... Q3J1A4 34590677
    197 7pil:AM (2.5) BS05 SPO ? GO:0005886 ... Q3J1A4 34590677
    198 7pil:AN (2.5) BS01 SPO ? GO:0005886 ... Q3J1A4 34590677
    199 7pil:BA (2.5) BS02 SPO ? GO:0016020 ... Q3J1A3 34590677
    200 7pil:BB (2.5) BS01 SPO ? GO:0016020 ... Q3J1A3 34590677
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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