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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e14:M (2.7) BS08 SPN ? GO:0009772 ... P0C0Y9 10821666
    2 1e6d:M (2.3) BS08 SPN ? GO:0009772 ... P0C0Y9 11042110
    3 1k6l:M (3.1) BS08 SPN ? GO:0009772 ... P0C0Y9 11993994
    4 1k6n:M (3.1) BS08 SPN ? GO:0009772 ... P0C0Y9 11993994
    5 1mps:M (2.55) BS08 SPN ? GO:0009772 ... P0C0Y9 9537989
    6 1qov:M (2.1) BS07 SPN ? GO:0009772 ... P0C0Y9 10611277
    7 1umx:M (2.8) BS07 SPN ? GO:0009772 ... P0C0Y9 14741581
    8 2boz:M (2.4) BS07 SPN ? GO:0009772 ... P0C0Y9 15908429
    9 2gmr:M (2.5) BS08 SPN ? GO:0009772 ... P0C0Y9 17105193
    10 2jiy:M (2.2) BS06 SPN ? GO:0009772 ... P0C0Y9 17711306
    11 2jj0:M (2.8) BS07 SPN ? GO:0009772 ... P0C0Y9 17711306
    12 2wx5:M (2.63) BS07 SPN ? GO:0009772 ... Q3J1A6 20112981
    13 3dsy:M (3.0) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    14 3dta:M (3.2) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    15 3dtr:M (3.1) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    16 3dts:M (3.1) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    17 3du2:M (3.1) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    18 3du3:M (2.8) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    19 3duq:M (2.7) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    20 3v3y:M (2.8) BS08 SPN ? GO:0009772 ... P0C0Y9 22365928
    21 3v3z:M (2.9) BS08 SPN ? GO:0009772 ... P0C0Y9 22365928
    22 3zum:M (2.5) BS07 SPN ? GO:0009772 ... P0C0Y9 21970763
    23 3zuw:M (2.31) BS07 SPN ? GO:0009772 ... P0C0Y9 21970763
    24 4lwy:M (2.903) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    25 5lri:M (2.4) BS08 SPN ? GO:0009772 ... Q3J1A6 27687473
    26 5lse:M (2.5) BS08 SPN ? GO:0009772 ... P0C0Y9 27687473
    27 6z02:M (2.1) BS08 SPN ? GO:0009772 ... P0C0Y9 33209319
    28 6z1j:M (2.1) BS08 SPN ? GO:0009772 ... P0C0Y9 33209319
    29 7od5:M (2.1) BS10 SPN ? GO:0009772 ... Q3J1A6 35371503
    30 7p0q:M (1.73) BS10 SPN ? GO:0009772 ... P0C0Y9 N/A
    31 7p17:M (2.22) BS07 SPN ? GO:0009772 ... P0C0Y9 N/A
    32 7p2c:M (2.04) BS11 SPN ? GO:0009772 ... Q3J1A6 35371503
    33 7q7f:M (2.75) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    34 7q7g:M (2.69) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    35 7q7h:M (2.49) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    36 7q7j:M (2.69) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    37 7q7m:M (2.55) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    38 7q7n:M (2.87) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    39 7q7o:M (2.65) BS08 SPN ? GO:0009772 ... P0C0Y9 N/A
    40 7voy:M (4.2) BS07 SPN ? GO:0009772 ... Q3J1A6 35418573
    41 7z8d:M (2.14) BS10 SPN ? GO:0009772 ... P0C0Y9 N/A
    42 8c3f:M (2.6) BS08 SPN ? GO:0009772 ... Q3J1A6 36837660
    43 8c5x:M (2.6) BS08 SPN ? GO:0009772 ... Q3J1A6 36837657
    44 8c6k:M (2.86) BS08 SPN ? GO:0009772 ... Q3J1A6 36837657
    45 8c7c:M (2.6) BS08 SPN ? GO:0009772 ... Q3J1A6 36837657
    46 8c87:M (2.45) BS09 SPN ? GO:0009772 ... Q3J1A6 36837657
    47 8c88:M (2.75) BS09 SPN ? GO:0009772 ... Q3J1A6 36837657
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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