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BioLiP
Download all results in tab-seperated text for 253 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 7x73:A (1.49) BS05 SFG 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 36635268
    202 7x73:B (1.49) BS05 SFG 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 36635268
    203 7xua:A (1.87) BS05 SFG 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 36882960
    204 7xua:B (1.87) BS05 SFG 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 36882960
    205 7xub:A (2.0) BS05 SFG 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 36882960
    206 7xub:B (2.0) BS05 SFG 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 36882960
    207 7xuc:A (1.67) BS05 SFG 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 36882960
    208 7xuc:B (1.67) BS05 SFG 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 36882960
    209 7xud:A (1.45) BS05 SFG 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 36882960
    210 7xud:B (1.45) BS05 SFG 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 36882960
    211 7yrj:A (2.35) BS01 SFG 2.1.1.- N/A Q9W138 N/A
    212 7yrj:B (2.35) BS01 SFG 2.1.1.- N/A Q9W138 N/A
    213 7yrj:C (2.35) BS01 SFG 2.1.1.- N/A Q9W138 N/A
    214 7yrj:D (2.35) BS01 SFG 2.1.1.- N/A Q9W138 N/A
    215 8b07:A (2.05) BS01 SFG 2.1.1.57 GO:0003746 ... A0A7H0DN74 37080993
    216 8b07:B (2.05) BS01 SFG 2.1.1.57 GO:0003746 ... A0A7H0DN74 37080993
    217 8b51:A (1.84) BS01 SFG 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... Q5WPU5 36334638
    218 8b51:B (1.84) BS01 SFG 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... Q5WPU5 36334638
    219 8bxk:A (2.31) BS01 SFG 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... K0BRZ6 N/A
    220 8bxk:B (2.31) BS01 SFG 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... K0BRZ6 N/A
    221 8gya:A (2.005) BS01 SFG 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    222 8gya:B (2.005) BS01 SFG 3.6.4.13 GO:0008168 ... A0A344X2I6 37831643
    223 8ipm:D (3.1) BS03 SFG 2.1.1.- GO:0008168 ... A6NJ78 38291322
    224 8joz:A (2.22) BS02 SFG 2.1.1.- GO:0002098 ... P36566 37587716
    225 8pb5:A (0.89) BS01 SFG 2.1.1.- GO:0005634 ... P0DPA9 38548735
    226 8pb7:A (0.92) BS01 SFG 2.1.1.- GO:0005634 ... P0DPA9 38548735
    227 8q9w:A (2.5) BS01 SFG N/A N/A O43148 N/A
    228 8q9w:B (2.5) BS01 SFG N/A N/A O43148 N/A
    229 8qdj:A (1.8) BS01 SFG N/A N/A K0BRZ6 38781970
    230 8s9m:A (1.49) BS01 SFG N/A GO:0003677 ... N/A 37414145
    231 8s9n:A (1.89) BS01 SFG N/A GO:0003677 ... N/A 37414145
    232 8s9o:A (1.94) BS01 SFG N/A GO:0003677 ... N/A 37414145
    233 8s9o:B (1.94) BS01 SFG N/A GO:0003677 ... N/A 37414145
    234 8urk:A (2.11) BS06 SFG N/A N/A A0A8I1DKW0 39244607
    235 8urk:B (2.11) BS06 SFG N/A N/A A0A8I1DKW0 39244607
    236 8urk:C (2.11) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    237 8urk:D (2.11) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    238 8x46:A (2.2) BS01 SFG N/A N/A O59487 39146930
    239 8x46:B (2.2) BS01 SFG N/A N/A O59487 39146930
    240 8x4p:A (2.6) BS01 SFG N/A N/A O59487 39146930
    241 8x4p:B (2.6) BS01 SFG N/A N/A O59487 39146930
    242 9c3s:A (2.16) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    243 9c3s:B (2.16) BS06 SFG N/A N/A A0A8I1DKW0 39244607
    244 9c3s:C (2.16) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    245 9c3s:D (2.16) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    246 9c3t:A (2.37) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    247 9c3t:B (2.37) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    248 9c3t:C (2.37) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    249 9c3t:D (2.37) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    250 9c3u:A (2.77) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    251 9c3u:B (2.77) BS06 SFG N/A N/A A0A8I1DKW0 39244607
    252 9c3u:C (2.77) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    253 9c3u:D (2.77) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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