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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 3ir6:B (2.8) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 20053990
    1202 3ir6:B (2.8) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 20053990
    1203 3ir7:A (2.5) BS03 SF4 1.7.5.1 GO:0005515 ... P09152 20053990
    1204 3ir7:B (2.5) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 20053990
    1205 3ir7:B (2.5) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 20053990
    1206 3ir7:B (2.5) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 20053990
    1207 3j15:B (6.6) BS03 SF4 N/A GO:0005524 ... N/A 22358840
    1208 3j15:B (6.6) BS04 SF4 N/A GO:0005524 ... N/A 22358840
    1209 3j16:B (7.2) BS05 SF4 ? GO:0000054 ... Q03195 22358840
    1210 3j16:B (7.2) BS06 SF4 ? GO:0000054 ... Q03195 22358840
    1211 3jag:jj (3.65) BS02 SF4 ? GO:0000054 ... G1SG72 26245381
    1212 3jag:jj (3.65) BS03 SF4 ? GO:0000054 ... G1SG72 26245381
    1213 3jah:jj (3.45) BS03 SF4 ? GO:0000054 ... G1SG72 26245381
    1214 3jah:jj (3.45) BS04 SF4 ? GO:0000054 ... G1SG72 26245381
    1215 3jai:jj (3.65) BS03 SF4 ? GO:0000054 ... G1SG72 26245381
    1216 3jai:jj (3.65) BS04 SF4 ? GO:0000054 ... G1SG72 26245381
    1217 3k30:A (2.7) BS01 SF4 ? GO:0000166 ... Q6IWJ5 20538584
    1218 3k30:B (2.7) BS01 SF4 ? GO:0000166 ... Q6IWJ5 20538584
    1219 3ke8:A (1.7) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 20080550
    1220 3ke8:B (1.7) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 20080550
    1221 3ke9:A (1.9) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 20080550
    1222 3ke9:B (1.9) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 20080550
    1223 3l9q:A (1.698) BS01 SF4 2.7.7.- GO:0006269 ... P49643 20643958
    1224 3l9q:B (1.698) BS01 SF4 2.7.7.- GO:0006269 ... P49643 20643958
    1225 3lgb:A (1.54) BS01 SF4 2.7.7.- GO:0006269 ... P20457 20404922
    1226 3lgb:B (1.54) BS01 SF4 2.7.7.- GO:0006269 ... P20457 20404922
    1227 3lw5:A (3.3) BS40 SF4 1.97.1.12 GO:0000287 ... P05310 19923216
    1228 3lw5:B (3.3) BS02 SF4 1.97.1.12 GO:0000287 ... P05311 19923216
    1229 3lw5:C (3.3) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    1230 3lw5:C (3.3) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    1231 3lx4:A (1.97) BS01 SF4 1.18.99.1 N/A Q9FYU1 20418861
    1232 3lx4:B (1.97) BS01 SF4 1.18.99.1 N/A Q9FYU1 20418861
    1233 3lzd:A (2.1) BS01 SF4 2.5.1.108 GO:0016740 ... O58832 20559380
    1234 3lzd:B (2.1) BS01 SF4 2.5.1.108 GO:0016740 ... O58832 20559380
    1235 3m9s:1 (4.5) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 20505720
    1236 3m9s:3 (4.5) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 20505720
    1237 3m9s:3 (4.5) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 20505720
    1238 3m9s:3 (4.5) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 20505720
    1239 3m9s:4 (4.5) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 20505720
    1240 3m9s:6 (4.5) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 20505720
    1241 3m9s:9 (4.5) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 20505720
    1242 3m9s:9 (4.5) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 20505720
    1243 3m9s:A (4.5) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 20505720
    1244 3m9s:C (4.5) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 20505720
    1245 3m9s:C (4.5) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 20505720
    1246 3m9s:C (4.5) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 20505720
    1247 3m9s:D (4.5) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 20505720
    1248 3m9s:F (4.5) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 20505720
    1249 3m9s:G (4.5) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 20505720
    1250 3m9s:G (4.5) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 20505720
    1251 3ml1:A (1.6) BS01 SF4 1.9.6.1 GO:0005506 ... P39185 21419779
    1252 3mm5:A (1.8) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1253 3mm5:A (1.8) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1254 3mm5:B (1.8) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1255 3mm5:B (1.8) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1256 3mm5:D (1.8) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1257 3mm5:D (1.8) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1258 3mm5:E (1.8) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1259 3mm5:E (1.8) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1260 3mm6:A (1.9) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1261 3mm6:A (1.9) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1262 3mm6:B (1.9) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1263 3mm6:B (1.9) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1264 3mm6:D (1.9) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1265 3mm6:D (1.9) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1266 3mm6:E (1.9) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1267 3mm6:E (1.9) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1268 3mm7:A (1.9) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1269 3mm7:A (1.9) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1270 3mm7:B (1.9) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1271 3mm7:B (1.9) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1272 3mm7:D (1.9) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1273 3mm7:D (1.9) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1274 3mm7:E (1.9) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1275 3mm7:E (1.9) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1276 3mm8:A (2.28) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1277 3mm8:A (2.28) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1278 3mm8:B (2.28) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1279 3mm8:B (2.28) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1280 3mm8:D (2.28) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1281 3mm8:D (2.28) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1282 3mm8:E (2.28) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1283 3mm8:E (2.28) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1284 3mm9:A (2.1) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1285 3mm9:A (2.1) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1286 3mm9:B (2.1) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1287 3mm9:B (2.1) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1288 3mm9:D (2.1) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1289 3mm9:D (2.1) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1290 3mm9:E (2.1) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1291 3mm9:E (2.1) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1292 3mma:A (2.3) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1293 3mma:A (2.3) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1294 3mma:B (2.3) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1295 3mma:B (2.3) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1296 3mma:D (2.3) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1297 3mma:D (2.3) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1298 3mma:E (2.3) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1299 3mma:E (2.3) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1300 3mmb:A (2.3) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1301 3mmb:A (2.3) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1302 3mmb:B (2.3) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1303 3mmb:B (2.3) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1304 3mmb:D (2.3) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1305 3mmb:D (2.3) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    1306 3mmb:E (2.3) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1307 3mmb:E (2.3) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    1308 3mmc:A (2.04) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 18495156
    1309 3mmc:A (2.04) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 18495156
    1310 3mmc:B (2.04) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 18495156
    1311 3mmc:B (2.04) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 18495156
    1312 3mmc:D (2.04) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 18495156
    1313 3mmc:D (2.04) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 18495156
    1314 3mmc:E (2.04) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 18495156
    1315 3mmc:E (2.04) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 18495156
    1316 3myr:A (2.1) BS01 SF4 1.12.99.6 GO:0008901 ... D3RV29 20673834
    1317 3myr:A (2.1) BS02 SF4 1.12.99.6 GO:0008901 ... D3RV29 20673834
    1318 3myr:B (2.1) BS01 SF4 ? GO:0005886 ... D3RV26 20673834
    1319 3myr:C (2.1) BS01 SF4 1.12.99.6 GO:0008901 ... D3RV29 20673834
    1320 3myr:C (2.1) BS02 SF4 1.12.99.6 GO:0008901 ... D3RV29 20673834
    1321 3myr:E (2.1) BS01 SF4 1.12.99.6 GO:0008901 ... D3RV29 20673834
    1322 3myr:E (2.1) BS02 SF4 1.12.99.6 GO:0008901 ... D3RV29 20673834
    1323 3myr:F (2.1) BS01 SF4 ? GO:0005886 ... D3RV26 20673834
    1324 3myr:G (2.1) BS01 SF4 1.12.99.6 GO:0008901 ... D3RV29 20673834
    1325 3myr:G (2.1) BS02 SF4 1.12.99.6 GO:0008901 ... D3RV29 20673834
    1326 3myr:H (2.1) BS01 SF4 ? GO:0005886 ... D3RV26 20673834
    1327 3n5n:X (2.3) BS01 SF4 3.2.2.31 GO:0003677 ... Q9UIF7 20816984
    1328 3n5n:Y (2.3) BS01 SF4 3.2.2.31 GO:0003677 ... Q9UIF7 20816984
    1329 3noy:A (2.7) BS01 SF4 1.17.7.3 GO:0005506 ... O67496 20932974
    1330 3noy:B (2.7) BS01 SF4 1.17.7.3 GO:0005506 ... O67496 20932974
    1331 3noy:B (2.7) BS02 SF4 1.17.7.3 GO:0005506 ... O67496 20932974
    1332 3noy:C (2.7) BS01 SF4 1.17.7.3 GO:0005506 ... O67496 20932974
    1333 3noy:C (2.7) BS02 SF4 1.17.7.3 GO:0005506 ... O67496 20932974
    1334 3noy:D (2.7) BS01 SF4 1.17.7.3 GO:0005506 ... O67496 20932974
    1335 3o3m:A (1.82) BS01 SF4 4.2.1.157 GO:0006551 ... Q5U924 21366233
    1336 3o3m:B (1.82) BS01 SF4 4.2.1.157 GO:0006551 ... Q5U923 21366233
    1337 3o3m:C (1.82) BS01 SF4 4.2.1.157 GO:0006551 ... Q5U924 21366233
    1338 3o3m:D (1.82) BS01 SF4 4.2.1.157 GO:0006551 ... Q5U923 21366233
    1339 3o3n:A (2.3) BS01 SF4 4.2.1.157 GO:0006551 ... Q5U924 21366233
    1340 3o3n:B (2.3) BS01 SF4 4.2.1.157 GO:0006551 ... Q5U923 21366233
    1341 3o3n:C (2.3) BS01 SF4 4.2.1.157 GO:0006551 ... Q5U924 21366233
    1342 3o3n:D (2.3) BS01 SF4 4.2.1.157 GO:0006551 ... Q5U923 21366233
    1343 3o3o:A (2.0) BS01 SF4 4.2.1.157 GO:0006551 ... Q5U924 21366233
    1344 3o3o:B (2.0) BS01 SF4 4.2.1.157 GO:0006551 ... Q5U923 21366233
    1345 3o5a:A (1.72) BS01 SF4 1.9.6.1 GO:0005506 ... P39185 21419779
    1346 3or1:A (1.76) BS03 SF4 ? GO:0000103 ... E2QR97 N/A
    1347 3or1:A (1.76) BS04 SF4 ? GO:0000103 ... E2QR97 N/A
    1348 3or1:B (1.76) BS03 SF4 ? GO:0000103 ... E2QR96 N/A
    1349 3or1:B (1.76) BS04 SF4 ? GO:0000103 ... E2QR96 N/A
    1350 3or1:D (1.76) BS03 SF4 ? GO:0000103 ... E2QR97 N/A
    1351 3or1:D (1.76) BS04 SF4 ? GO:0000103 ... E2QR97 N/A
    1352 3or1:E (1.76) BS03 SF4 ? GO:0000103 ... E2QR96 N/A
    1353 3or1:E (1.76) BS04 SF4 ? GO:0000103 ... E2QR96 N/A
    1354 3or2:A (2.05) BS01 SF4 ? GO:0000103 ... E2QR97 N/A
    1355 3or2:A (2.05) BS02 SF4 ? GO:0000103 ... E2QR97 N/A
    1356 3or2:B (2.05) BS03 SF4 ? GO:0000103 ... E2QR96 N/A
    1357 3or2:B (2.05) BS04 SF4 ? GO:0000103 ... E2QR96 N/A
    1358 3or2:D (2.05) BS01 SF4 ? GO:0000103 ... E2QR97 N/A
    1359 3or2:D (2.05) BS02 SF4 ? GO:0000103 ... E2QR97 N/A
    1360 3or2:E (2.05) BS03 SF4 ? GO:0000103 ... E2QR96 N/A
    1361 3or2:E (2.05) BS04 SF4 ? GO:0000103 ... E2QR96 N/A
    1362 3p4p:B (2.8) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    1363 3p4p:N (2.8) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    1364 3p4q:B (3.35) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    1365 3p4q:N (3.35) BS01 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    1366 3p4r:B (3.05) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    1367 3p4r:N (3.05) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    1368 3p4s:B (3.1) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    1369 3p4s:N (3.1) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    1370 3pcq:A (8.984) BS48 SF4 1.97.1.12 GO:0000287 ... P0A405 21293373
    1371 3pcq:B (8.984) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 21293373
    1372 3pcq:C (8.984) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 21293373
    1373 3pcq:C (8.984) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 21293373
    1374 3pdi:A (2.4) BS01 SF4 ? GO:0009399 ... C1DH03 21212358
    1375 3pdi:B (2.4) BS01 SF4 ? GO:0009399 ... C1DH04 21212358
    1376 3pdi:C (2.4) BS01 SF4 ? GO:0009399 ... C1DH03 21212358
    1377 3pdi:D (2.4) BS01 SF4 ? GO:0009399 ... C1DH04 21212358
    1378 3pdi:E (2.4) BS01 SF4 ? GO:0009399 ... C1DH03 21212358
    1379 3pdi:F (2.4) BS01 SF4 ? GO:0009399 ... C1DH04 21212358
    1380 3pdi:G (2.4) BS01 SF4 ? GO:0009399 ... C1DH03 21212358
    1381 3pdi:H (2.4) BS01 SF4 ? GO:0009399 ... C1DH04 21212358
    1382 3q36:A (2.5) BS01 SF4 2.7.7.- GO:0006269 ... P49643 21346410
    1383 3q36:B (2.5) BS01 SF4 2.7.7.- GO:0006269 ... P49643 21346410
    1384 3rf9:A (2.2) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    1385 3rf9:B (2.2) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    1386 3rfa:A (2.05) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    1387 3rfa:B (2.05) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    1388 3rgw:S (1.5) BS01 SF4 1.12.99.6 GO:0005515 ... P31892 22002606
    1389 3sfd:B (2.61) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 21822798
    1390 3sfe:B (2.81) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 21822798
    1391 3szl:A (1.6) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22137895
    1392 3szl:B (1.6) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22137895
    1393 3szo:A (1.6) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22137895
    1394 3szo:B (1.6) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22137895
    1395 3t7v:A (1.5) BS01 SF4 5.4.99.58 GO:0003824 ... Q46E78 22095926
    1396 3u44:B (3.201) BS02 SF4 3.1.-.- GO:0000724 ... P23477 22307084
    1397 3uqy:S (1.47) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 22431599
    1398 3uqy:T (1.47) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 22431599
    1399 3urk:A (1.5) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22948824
    1400 3urk:B (1.5) BS01 SF4 1.17.7.4 GO:0005829 ... P62623 22948824
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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