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BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 3aek:C (2.3) BS02 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1002 3aek:D (2.3) BS02 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    1003 3aeq:A (2.9) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1004 3aeq:B (2.9) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    1005 3aeq:C (2.9) BS02 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1006 3aeq:D (2.9) BS02 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    1007 3aer:A (2.8) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1008 3aer:B (2.8) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    1009 3aer:C (2.8) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1010 3aer:D (2.8) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    1011 3aes:A (2.5) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1012 3aes:B (2.5) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    1013 3aes:C (2.5) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1014 3aes:D (2.5) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    1015 3aet:A (2.91) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1016 3aet:B (2.91) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    1017 3aet:C (2.91) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1018 3aet:D (2.91) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    1019 3aeu:A (2.9) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1020 3aeu:C (2.9) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1021 3aeu:D (2.9) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946
    1022 3aop:A (2.1) BS02 SF4 1.8.1.2 GO:0004783 ... P17846 9315848
    1023 3ayx:B (1.18) BS03 SF4 1.12.99.6 GO:0008901 ... F2Z6J5 22002607
    1024 3ayx:D (1.18) BS03 SF4 1.12.99.6 GO:0008901 ... F2Z6J5 22002607
    1025 3ayz:B (1.22) BS04 SF4 1.12.99.6 GO:0008901 ... F2Z6J5 22002607
    1026 3ayz:D (1.22) BS04 SF4 1.12.99.6 GO:0008901 ... F2Z6J5 22002607
    1027 3b0g:A (1.25) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22238192
    1028 3b0h:A (2.306) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KA9 22238192
    1029 3b0h:B (2.306) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KA9 22238192
    1030 3b0j:A (1.7) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22238192
    1031 3b0l:A (1.7) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22238192
    1032 3b0m:A (1.9) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22238192
    1033 3b0n:A (2.0) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22238192
    1034 3b51:X (1.4) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 18048691
    1035 3b52:X (1.5) BS02 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 18048691
    1036 3b53:X (1.5) BS02 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 18048691
    1037 3bk7:A (2.8) BS01 SF4 ? GO:0005506 ... Q9UZA4 18160405
    1038 3bk7:A (2.8) BS02 SF4 ? GO:0005506 ... Q9UZA4 18160405
    1039 3c8f:A (2.25) BS01 SF4 1.97.1.4 GO:0003824 ... P0A9N4 18852451
    1040 3c8y:A (1.39) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 18324814
    1041 3c8y:A (1.39) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 18324814
    1042 3c8y:A (1.39) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 18324814
    1043 3c8y:A (1.39) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 18324814
    1044 3cb8:A (2.77) BS03 SF4 1.97.1.4 GO:0003824 ... P0A9N4 18852451
    1045 3cf4:A (2.0) BS01 SF4 1.2.7.4 GO:0003824 ... Q46G04 18621675
    1046 3cf4:A (2.0) BS02 SF4 1.2.7.4 GO:0003824 ... Q46G04 18621675
    1047 3cf4:A (2.0) BS06 SF4 1.2.7.4 GO:0003824 ... Q46G04 18621675
    1048 3cf4:A (2.0) BS07 SF4 1.2.7.4 GO:0003824 ... Q46G04 18621675
    1049 3cir:B (3.65) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 18385138
    1050 3cir:N (3.65) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 18385138
    1051 3ciw:A (1.35) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 18400755
    1052 3cix:A (1.7) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 18400755
    1053 3crv:A (2.0) BS01 SF4 3.6.4.12 GO:0003676 ... Q4JC68 18510924
    1054 3cur:A (2.4) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1055 3cur:A (2.4) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1056 3cur:B (2.4) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1057 3cur:B (2.4) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1058 3cur:C (2.4) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1059 3cur:C (2.4) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1060 3cur:H (2.4) BS02 SF4 1.12.2.1 GO:0008901 ... P18188 18685111
    1061 3cur:J (2.4) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 18685111
    1062 3cus:A (2.2) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1063 3cus:A (2.2) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1064 3cus:B (2.2) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1065 3cus:B (2.2) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1066 3cus:C (2.2) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1067 3cus:C (2.2) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 18685111
    1068 3egw:A (1.9) BS04 SF4 1.7.5.1 GO:0005515 ... P09152 N/A
    1069 3egw:B (1.9) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 N/A
    1070 3egw:B (1.9) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 N/A
    1071 3eun:A (1.05) BS01 SF4 ? GO:0046872 ... P00208 19290553
    1072 3eun:A (1.05) BS02 SF4 ? GO:0046872 ... P00208 19290553
    1073 3exy:A (1.48) BS01 SF4 ? GO:0046872 ... P00208 19290553
    1074 3exy:A (1.48) BS02 SF4 ? GO:0046872 ... P00208 19290553
    1075 3fwy:A (1.63) BS02 SF4 1.3.7.7 GO:0005524 ... Q9RFD6 19006326
    1076 3fwy:B (1.63) BS01 SF4 1.3.7.7 GO:0005524 ... Q9RFD6 19006326
    1077 3g0q:A (2.2) BS03 SF4 3.2.2.31 GO:0000701 ... P83847 19841264
    1078 3geo:A (2.1) BS02 SF4 1.8.1.2 GO:0004783 ... P17846 9315849
    1079 3git:A (3.0) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19650626
    1080 3git:B (3.0) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19650626
    1081 3git:C (3.0) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19650626
    1082 3git:D (3.0) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19650626
    1083 3git:E (3.0) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19650626
    1084 3git:F (3.0) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19650626
    1085 3gyx:B (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    1086 3gyx:B (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    1087 3gyx:D (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    1088 3gyx:D (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    1089 3gyx:F (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    1090 3gyx:F (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    1091 3gyx:H (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    1092 3gyx:H (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    1093 3gyx:J (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    1094 3gyx:J (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    1095 3gyx:L (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    1096 3gyx:L (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    1097 3h31:A (1.0) BS01 SF4 ? GO:0009055 ... C4P582 20225399
    1098 3h3x:A (2.7) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 19580279
    1099 3h3x:A (2.7) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 19580279
    1100 3h3x:B (2.7) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 19580279
    1101 3h3x:B (2.7) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 19580279
    1102 3h3x:C (2.7) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 19580279
    1103 3h3x:C (2.7) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 19580279
    1104 3hip:A (2.8) BS01 SF4 ? GO:0009055 ... P59860 9760225
    1105 3hip:B (2.8) BS01 SF4 ? GO:0009055 ... P59860 9760225
    1106 3hip:C (2.8) BS01 SF4 ? GO:0009055 ... P59860 9760225
    1107 3i01:A (2.15) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1108 3i01:A (2.15) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1109 3i01:B (2.15) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1110 3i01:B (2.15) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1111 3i01:C (2.15) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1112 3i01:C (2.15) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1113 3i01:D (2.15) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1114 3i01:D (2.15) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1115 3i01:M (2.15) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19583207
    1116 3i01:N (2.15) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19583207
    1117 3i01:O (2.15) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19583207
    1118 3i01:P (2.15) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19583207
    1119 3i04:A (2.15) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1120 3i04:A (2.15) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1121 3i04:B (2.15) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1122 3i04:B (2.15) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1123 3i04:C (2.15) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1124 3i04:C (2.15) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1125 3i04:D (2.15) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1126 3i04:D (2.15) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 19583207
    1127 3i04:M (2.15) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19583207
    1128 3i04:N (2.15) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 19583207
    1129 3i04:O (2.15) BS01 SF4 2.3.1.169 GO:0003824 ... P27988 19583207
    1130 3i04:P (2.15) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 19583207
    1131 3i39:X (1.36) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 19583208
    1132 3i9v:1 (3.1) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    1133 3i9v:3 (3.1) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1134 3i9v:3 (3.1) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1135 3i9v:3 (3.1) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1136 3i9v:4 (3.1) BS02 SF4 7.1.1.- GO:0005886 ... Q56220 19635800
    1137 3i9v:6 (3.1) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    1138 3i9v:9 (3.1) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1139 3i9v:9 (3.1) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1140 3i9v:A (3.1) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    1141 3i9v:C (3.1) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1142 3i9v:C (3.1) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1143 3i9v:C (3.1) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1144 3i9v:F (3.1) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    1145 3i9v:G (3.1) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1146 3i9v:G (3.1) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1147 3iam:1 (3.1) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    1148 3iam:3 (3.1) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1149 3iam:3 (3.1) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1150 3iam:3 (3.1) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1151 3iam:4 (3.1) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 19635800
    1152 3iam:6 (3.1) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    1153 3iam:9 (3.1) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1154 3iam:9 (3.1) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1155 3iam:A (3.1) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    1156 3iam:C (3.1) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1157 3iam:C (3.1) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1158 3iam:C (3.1) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1159 3iam:F (3.1) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    1160 3iam:G (3.1) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1161 3iam:G (3.1) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1162 3ias:1 (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    1163 3ias:3 (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1164 3ias:3 (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1165 3ias:3 (3.15) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1166 3ias:4 (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 19635800
    1167 3ias:6 (3.15) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    1168 3ias:9 (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1169 3ias:9 (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1170 3ias:A (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    1171 3ias:C (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1172 3ias:C (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1173 3ias:C (3.15) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1174 3ias:D (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 19635800
    1175 3ias:F (3.15) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    1176 3ias:G (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1177 3ias:G (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1178 3ias:J (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    1179 3ias:L (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1180 3ias:L (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1181 3ias:L (3.15) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1182 3ias:M (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 19635800
    1183 3ias:O (3.15) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    1184 3ias:P (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1185 3ias:P (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1186 3ias:S (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    1187 3ias:U (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1188 3ias:U (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1189 3ias:U (3.15) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    1190 3ias:V (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 19635800
    1191 3ias:X (3.15) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    1192 3ias:Y (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1193 3ias:Y (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    1194 3iix:A (1.25) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 19706452
    1195 3iiz:A (1.62) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 19706452
    1196 3ir5:A (2.3) BS04 SF4 1.7.5.1 GO:0005515 ... P09152 20053990
    1197 3ir5:B (2.3) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 20053990
    1198 3ir5:B (2.3) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 20053990
    1199 3ir5:B (2.3) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 20053990
    1200 3ir6:B (2.8) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 20053990
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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