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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 2tmd:B (2.4) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 1551870
    802 2uza:A (2.42) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    803 2uza:A (2.42) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    804 2uza:A (2.42) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    805 2uza:B (2.42) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    806 2uza:B (2.42) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    807 2uza:B (2.42) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    808 2v3v:A (1.99) BS01 SF4 1.9.6.1 GO:0005506 ... P81186 18327621
    809 2v45:A (2.4) BS01 SF4 1.9.6.1 GO:0005506 ... P81186 18327621
    810 2v4j:A (2.1) BS01 SF4 1.8.99.3 GO:0000103 ... P45574 18829451
    811 2v4j:A (2.1) BS02 SF4 1.8.99.3 GO:0000103 ... P45574 18829451
    812 2v4j:B (2.1) BS02 SF4 1.8.1.22 GO:0000103 ... P45575 18829451
    813 2v4j:B (2.1) BS03 SF4 1.8.1.22 GO:0000103 ... P45575 18829451
    814 2v4j:D (2.1) BS01 SF4 1.8.99.3 GO:0000103 ... P45574 18829451
    815 2v4j:D (2.1) BS02 SF4 1.8.99.3 GO:0000103 ... P45574 18829451
    816 2v4j:E (2.1) BS02 SF4 1.8.1.22 GO:0000103 ... P45575 18829451
    817 2v4j:E (2.1) BS03 SF4 1.8.1.22 GO:0000103 ... P45575 18829451
    818 2vdc:G (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    819 2vdc:G (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    820 2vdc:H (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    821 2vdc:H (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    822 2vdc:I (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    823 2vdc:I (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    824 2vdc:J (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    825 2vdc:J (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    826 2vdc:K (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    827 2vdc:K (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    828 2vdc:L (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    829 2vdc:L (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    830 2vkr:A (2.01) BS02 SF4 ? GO:0008270 ... P49949 18258200
    831 2vkr:B (2.01) BS02 SF4 ? GO:0008270 ... P49949 18258200
    832 2vkr:C (2.01) BS02 SF4 ? GO:0008270 ... P49949 18258200
    833 2vkr:D (2.01) BS02 SF4 ? GO:0008270 ... P49949 18258200
    834 2vkr:E (2.01) BS02 SF4 ? GO:0008270 ... P49949 18258200
    835 2vkr:F (2.01) BS02 SF4 ? GO:0008270 ... P49949 18258200
    836 2vkr:G (2.01) BS02 SF4 ? GO:0008270 ... P49949 18258200
    837 2vpw:A (3.1) BS01 SF4 1.-.-.- GO:0016491 ... Q72LA4 18536726
    838 2vpw:B (3.1) BS01 SF4 ? GO:0009055 ... Q72LA5 18536726
    839 2vpw:B (3.1) BS02 SF4 ? GO:0009055 ... Q72LA5 18536726
    840 2vpw:B (3.1) BS03 SF4 ? GO:0009055 ... Q72LA5 18536726
    841 2vpw:B (3.1) BS04 SF4 ? GO:0009055 ... Q72LA5 18536726
    842 2vpw:E (3.1) BS01 SF4 1.-.-.- GO:0016491 ... Q72LA4 18536726
    843 2vpw:F (3.1) BS01 SF4 ? GO:0009055 ... Q72LA5 18536726
    844 2vpw:F (3.1) BS02 SF4 ? GO:0009055 ... Q72LA5 18536726
    845 2vpw:F (3.1) BS03 SF4 ? GO:0009055 ... Q72LA5 18536726
    846 2vpw:F (3.1) BS04 SF4 ? GO:0009055 ... Q72LA5 18536726
    847 2vpw:F (3.1) BS05 SF4 ? GO:0009055 ... Q72LA5 18536726
    848 2vpx:A (3.1) BS01 SF4 1.-.-.- GO:0016491 ... Q72LA4 18536726
    849 2vpx:B (3.1) BS01 SF4 ? GO:0009055 ... Q72LA5 18536726
    850 2vpx:B (3.1) BS02 SF4 ? GO:0009055 ... Q72LA5 18536726
    851 2vpx:B (3.1) BS03 SF4 ? GO:0009055 ... Q72LA5 18536726
    852 2vpx:B (3.1) BS04 SF4 ? GO:0009055 ... Q72LA5 18536726
    853 2vpx:E (3.1) BS01 SF4 1.-.-.- GO:0016491 ... Q72LA4 18536726
    854 2vpx:F (3.1) BS01 SF4 ? GO:0009055 ... Q72LA5 18536726
    855 2vpx:F (3.1) BS02 SF4 ? GO:0009055 ... Q72LA5 18536726
    856 2vpx:F (3.1) BS03 SF4 ? GO:0009055 ... Q72LA5 18536726
    857 2vpx:F (3.1) BS04 SF4 ? GO:0009055 ... Q72LA5 18536726
    858 2vpx:F (3.1) BS05 SF4 ? GO:0009055 ... Q72LA5 18536726
    859 2vpy:A (2.5) BS01 SF4 1.-.-.- GO:0016491 ... Q72LA4 18536726
    860 2vpy:B (2.5) BS01 SF4 ? GO:0009055 ... Q72LA5 18536726
    861 2vpy:B (2.5) BS02 SF4 ? GO:0009055 ... Q72LA5 18536726
    862 2vpy:B (2.5) BS03 SF4 ? GO:0009055 ... Q72LA5 18536726
    863 2vpy:B (2.5) BS04 SF4 ? GO:0009055 ... Q72LA5 18536726
    864 2vpy:E (2.5) BS01 SF4 1.-.-.- GO:0016491 ... Q72LA4 18536726
    865 2vpy:F (2.5) BS01 SF4 ? GO:0009055 ... Q72LA5 18536726
    866 2vpy:F (2.5) BS02 SF4 ? GO:0009055 ... Q72LA5 18536726
    867 2vpy:F (2.5) BS03 SF4 ? GO:0009055 ... Q72LA5 18536726
    868 2vpy:F (2.5) BS04 SF4 ? GO:0009055 ... Q72LA5 18536726
    869 2vpy:F (2.5) BS05 SF4 ? GO:0009055 ... Q72LA5 18536726
    870 2vpz:A (2.4) BS01 SF4 1.-.-.- GO:0016491 ... Q72LA4 18536726
    871 2vpz:B (2.4) BS01 SF4 ? GO:0009055 ... Q72LA5 18536726
    872 2vpz:B (2.4) BS02 SF4 ? GO:0009055 ... Q72LA5 18536726
    873 2vpz:B (2.4) BS03 SF4 ? GO:0009055 ... Q72LA5 18536726
    874 2vpz:B (2.4) BS04 SF4 ? GO:0009055 ... Q72LA5 18536726
    875 2vpz:E (2.4) BS01 SF4 1.-.-.- GO:0016491 ... Q72LA4 18536726
    876 2vpz:F (2.4) BS01 SF4 ? GO:0009055 ... Q72LA5 18536726
    877 2vpz:F (2.4) BS02 SF4 ? GO:0009055 ... Q72LA5 18536726
    878 2vpz:F (2.4) BS03 SF4 ? GO:0009055 ... Q72LA5 18536726
    879 2vpz:F (2.4) BS04 SF4 ? GO:0009055 ... Q72LA5 18536726
    880 2vpz:F (2.4) BS05 SF4 ? GO:0009055 ... Q72LA5 18536726
    881 2vsf:A (2.9) BS01 SF4 3.6.4.12 GO:0003676 ... Q9HM14 18578568
    882 2wdq:B (2.4) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 19710024
    883 2wdq:F (2.4) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 19710024
    884 2wdq:J (2.4) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 19710024
    885 2wdr:B (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 19710024
    886 2wdr:F (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 19710024
    887 2wdr:J (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 19710024
    888 2wdv:B (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 19710024
    889 2wdv:F (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 19710024
    890 2wdv:J (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 19710024
    891 2wp9:B (2.7) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 21310949
    892 2wp9:F (2.7) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 21310949
    893 2wp9:J (2.7) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 21310949
    894 2wpn:A (2.04) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 20026074
    895 2wpn:A (2.04) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 20026074
    896 2wpn:A (2.04) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 20026074
    897 2wqy:B (2.1) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 N/A
    898 2wqy:O (2.1) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 N/A
    899 2ws3:B (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    900 2ws3:F (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    901 2ws3:J (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    902 2wsc:A (3.3) BS44 SF4 1.97.1.12 GO:0000287 ... P05310 19923216
    903 2wsc:B (3.3) BS44 SF4 1.97.1.12 GO:0000287 ... P05311 19923216
    904 2wsc:C (3.3) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    905 2wsc:C (3.3) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    906 2wse:A (3.49) BS41 SF4 1.97.1.12 GO:0000287 ... P05310 19923216
    907 2wse:B (3.49) BS04 SF4 1.97.1.12 GO:0000287 ... P05311 19923216
    908 2wse:C (3.49) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    909 2wse:C (3.49) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    910 2wsf:A (3.48) BS40 SF4 1.97.1.12 GO:0000287 ... P05310 19923216
    911 2wsf:B (3.48) BS04 SF4 1.97.1.12 GO:0000287 ... P05311 19923216
    912 2wsf:C (3.48) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    913 2wsf:C (3.48) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    914 2wu2:B (2.5) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    915 2wu2:F (2.5) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    916 2wu2:J (2.5) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    917 2wu5:B (2.803) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    918 2wu5:F (2.803) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    919 2wu5:J (2.803) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    920 2xdq:A (2.4) BS01 SF4 1.3.7.7 GO:0005524 ... Q8DGH2 20558746
    921 2xsj:A (2.5) BS01 SF4 1.8.99.3 GO:0000103 ... Q93UT1 21833321
    922 2xsj:A (2.5) BS02 SF4 1.8.99.3 GO:0000103 ... Q93UT1 21833321
    923 2xsj:B (2.5) BS02 SF4 1.8.99.3 GO:0006790 ... Q93UT0 21833321
    924 2xsj:B (2.5) BS03 SF4 1.8.99.3 GO:0006790 ... Q93UT0 21833321
    925 2xsj:D (2.5) BS01 SF4 1.8.99.3 GO:0000103 ... Q93UT1 21833321
    926 2xsj:D (2.5) BS02 SF4 1.8.99.3 GO:0000103 ... Q93UT1 21833321
    927 2xsj:E (2.5) BS02 SF4 1.8.99.3 GO:0006790 ... Q93UT0 21833321
    928 2xsj:E (2.5) BS03 SF4 1.8.99.3 GO:0006790 ... Q93UT0 21833321
    929 2y0f:A (2.5) BS01 SF4 1.17.7.3 GO:0005506 ... Q72H18 21167158
    930 2y0f:B (2.5) BS01 SF4 1.17.7.3 GO:0005506 ... Q72H18 21167158
    931 2y0f:C (2.5) BS01 SF4 1.17.7.3 GO:0005506 ... Q72H18 21167158
    932 2y0f:D (2.5) BS01 SF4 1.17.7.3 GO:0005506 ... Q72H18 21167158
    933 2y8n:A (1.75) BS01 SF4 4.1.1.83 GO:0003824 ... Q38HX4 21823587
    934 2y8n:B (1.75) BS01 SF4 4.1.1.83 GO:0016829 ... Q38HX3 21823587
    935 2y8n:B (1.75) BS02 SF4 4.1.1.83 GO:0016829 ... Q38HX3 21823587
    936 2y8n:D (1.75) BS01 SF4 4.1.1.83 GO:0016829 ... Q38HX3 21823587
    937 2y8n:D (1.75) BS02 SF4 4.1.1.83 GO:0016829 ... Q38HX3 21823587
    938 2yaj:B (1.813) BS01 SF4 4.1.1.83 GO:0016829 ... Q38HX3 21823587
    939 2yaj:B (1.813) BS02 SF4 4.1.1.83 GO:0016829 ... Q38HX3 21823587
    940 2yaj:D (1.813) BS01 SF4 4.1.1.83 GO:0016829 ... Q38HX3 21823587
    941 2yaj:D (1.813) BS02 SF4 4.1.1.83 GO:0016829 ... Q38HX3 21823587
    942 2ybb:1 (19.0) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 21909073
    943 2ybb:3 (19.0) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 21909073
    944 2ybb:3 (19.0) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 21909073
    945 2ybb:3 (19.0) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 21909073
    946 2ybb:4 (19.0) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 21909073
    947 2ybb:6 (19.0) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 21909073
    948 2ybb:8 (19.0) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 21909073
    949 2ybb:8 (19.0) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 21909073
    950 2ycl:A (1.95) BS02 SF4 ? GO:0005506 ... Q3ACS3 21640123
    951 2yiv:X (1.28) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 21904889
    952 2ynm:A (2.1) BS03 SF4 1.3.7.7 GO:0005524 ... Q7VD39 23341615
    953 2ynm:B (2.1) BS02 SF4 1.3.7.7 GO:0005524 ... Q7VD39 23341615
    954 2ynm:C (2.1) BS01 SF4 1.3.7.7 GO:0005524 ... Q7VD37 23341615
    955 2ynm:D (2.1) BS01 SF4 1.3.7.7 GO:0005524 ... Q7VD38 23341615
    956 2z1d:A (2.07) BS01 SF4 ? GO:0005506 ... Q5JII1 17612488
    957 2z1d:B (2.07) BS01 SF4 ? GO:0005506 ... Q5JII1 17612488
    958 2z8q:A (1.7) BS01 SF4 ? GO:0005506 ... P29603 N/A
    959 2z8q:B (1.7) BS01 SF4 ? GO:0005506 ... P29603 N/A
    960 2z8y:A (2.51) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 18293927
    961 2z8y:A (2.51) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 18293927
    962 2z8y:B (2.51) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 18293927
    963 2z8y:B (2.51) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 18293927
    964 2z8y:C (2.51) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 18293927
    965 2z8y:C (2.51) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 18293927
    966 2z8y:D (2.51) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 18293927
    967 2z8y:D (2.51) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 18293927
    968 2z8y:M (2.51) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 18293927
    969 2z8y:N (2.51) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 18293927
    970 2z8y:O (2.51) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 18293927
    971 2z8y:P (2.51) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 18293927
    972 2zvs:A (1.65) BS01 SF4 ? GO:0002097 ... P52102 19290553
    973 2zvs:A (1.65) BS02 SF4 ? GO:0002097 ... P52102 19290553
    974 2zvs:B (1.65) BS01 SF4 ? GO:0002097 ... P52102 19290553
    975 2zvs:B (1.65) BS02 SF4 ? GO:0002097 ... P52102 19290553
    976 2zvs:C (1.65) BS01 SF4 ? GO:0002097 ... P52102 19290553
    977 2zvs:C (1.65) BS02 SF4 ? GO:0002097 ... P52102 19290553
    978 3a04:A (1.97) BS01 SF4 6.1.1.2 GO:0000166 ... Q9Y924 N/A
    979 3a05:A (2.2) BS02 SF4 6.1.1.2 GO:0000166 ... Q9Y924 N/A
    980 3a38:A (0.7) BS01 SF4 ? GO:0009055 ... P80176 19782139
    981 3a39:A (0.72) BS01 SF4 ? GO:0009055 ... P80176 19782139
    982 3abv:B (3.24) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 26198225
    983 3ae1:B (3.139) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    984 3ae2:B (3.1) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    985 3ae3:B (3.35) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    986 3ae4:B (2.91) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    987 3ae5:B (3.41) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    988 3ae6:B (3.4) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    989 3ae7:B (3.62) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 26198225
    990 3ae8:B (3.4) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    991 3ae9:B (3.31) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 26198225
    992 3aea:B (3.39) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 26198225
    993 3aeb:B (3.0) BS03 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    994 3aec:B (3.61) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    995 3aed:B (3.52) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    996 3aee:B (3.22) BS03 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    997 3aef:B (2.8) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    998 3aeg:B (3.27) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 N/A
    999 3aek:A (2.3) BS01 SF4 1.3.7.7 GO:0005515 ... P26164 20400946
    1000 3aek:B (2.3) BS01 SF4 1.3.7.7 GO:0005515 ... P26163 20400946

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218