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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8201 8ugh:1D (2.1) BS01 SF4 N/A N/A A0A8D1TTB3 38811722
    8202 8ugh:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    8203 8ugh:1G (2.1) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8204 8ugh:1G (2.1) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8205 8ugh:1I (2.1) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8206 8ugh:1I (2.1) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8207 8ugi:1B (2.1) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    8208 8ugi:1D (2.1) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    8209 8ugi:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    8210 8ugi:1G (2.1) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8211 8ugi:1G (2.1) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8212 8ugi:1I (2.1) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8213 8ugi:1I (2.1) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8214 8ugj:1B (2.3) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    8215 8ugj:1D (2.3) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    8216 8ugj:1D (2.3) BS02 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    8217 8ugj:1F (2.3) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    8218 8ugj:1G (2.3) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8219 8ugj:1G (2.3) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8220 8ugj:1I (2.3) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8221 8ugj:1I (2.3) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8222 8ugn:1B (2.7) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    8223 8ugn:1D (2.7) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    8224 8ugn:1D (2.7) BS02 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    8225 8ugn:1F (2.7) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    8226 8ugn:1G (2.7) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8227 8ugn:1G (2.7) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8228 8ugn:1I (2.7) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8229 8ugn:1I (2.7) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8230 8ugn:5B (2.7) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    8231 8ugn:5D (2.7) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    8232 8ugn:5D (2.7) BS02 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    8233 8ugn:5F (2.7) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    8234 8ugn:5G (2.7) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8235 8ugn:5G (2.7) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8236 8ugn:5I (2.7) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8237 8ugn:5I (2.7) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8238 8ugp:1B (2.0) BS04 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    8239 8ugp:1D (2.0) BS03 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    8240 8ugp:1I (2.0) BS05 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8241 8ugp:1I (2.0) BS06 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8242 8ugr:1B (6.5) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    8243 8ugr:1D (6.5) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    8244 8ugr:1F (6.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    8245 8ugr:1G (6.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8246 8ugr:1G (6.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8247 8ugr:1I (6.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8248 8ugr:1I (6.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8249 8ugr:5B (6.5) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    8250 8ugr:5F (6.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    8251 8ugr:5G (6.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8252 8ugr:5G (6.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8253 8ugr:5I (6.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8254 8ugr:5I (6.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    8255 8uvr:1d (2.6) BS02 SF4 N/A N/A P80373 38165935
    8256 8uvr:2d (2.6) BS03 SF4 N/A N/A P80373 38165935
    8257 8uvs:1d (2.75) BS02 SF4 N/A N/A P80373 38165935
    8258 8uvs:2d (2.75) BS03 SF4 N/A N/A P80373 38165935
    8259 8v6g:C (11.16) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    8260 8v6h:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    8261 8v6i:C (14.06) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    8262 8v6j:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    8263 8vcw:A (1.35) BS03 SF4 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    8264 8vdw:A (1.807) BS03 SF4 2.8.1.6 GO:0003824 ... N/A 38215281
    8265 8vdw:B (1.807) BS03 SF4 2.8.1.6 GO:0003824 ... N/A 38215281
    8266 8vpo:A (1.66) BS01 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    8267 8vpo:A (1.66) BS02 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    8268 8vtu:1d (2.4) BS02 SF4 N/A N/A P80373 39039256
    8269 8vtu:2d (2.4) BS02 SF4 N/A N/A P80373 39039256
    8270 8vtv:1d (2.55) BS02 SF4 N/A N/A P80373 39039256
    8271 8vtv:2d (2.55) BS03 SF4 N/A N/A P80373 39039256
    8272 8vtw:1d (2.35) BS03 SF4 N/A N/A P80373 39039256
    8273 8vtw:2d (2.35) BS02 SF4 N/A N/A P80373 39039256
    8274 8vtx:1d (2.4) BS02 SF4 N/A N/A P80373 39039256
    8275 8vtx:2d (2.4) BS03 SF4 N/A N/A P80373 39039256
    8276 8vty:1d (2.6) BS02 SF4 N/A N/A P80373 39039256
    8277 8vty:2d (2.6) BS02 SF4 N/A N/A P80373 39039256
    8278 8vy3:B (2.98) BS01 SF4 N/A N/A P49643 N/A
    8279 8w6x:L (1.04) BS03 SF4 1.12.2.1 GO:0016491 ... P21852 37712026
    8280 8w6x:S (1.04) BS01 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    8281 8w6x:S (1.04) BS02 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    8282 8wak:7 (5.47) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    8283 8wal:7 (8.52) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    8284 8wan:7 (6.07) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    8285 8wao:7 (6.4) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    8286 8wap:7 (5.85) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    8287 8waq:7 (6.29) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    8288 8war:7 (7.2) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    8289 8was:7 (6.13) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    8290 8wey:A (1.92) BS41 SF4 N/A GO:0009579 ... N/A 38442179
    8291 8wey:B (1.92) BS06 SF4 N/A GO:0009522 ... N/A 38442179
    8292 8wey:C (1.92) BS01 SF4 N/A GO:0009055 ... N/A 38442179
    8293 8wey:C (1.92) BS02 SF4 N/A GO:0009055 ... N/A 38442179
    8294 8wgh:A (2.4) BS43 SF4 N/A GO:0000287 ... A0A8A0WPY6 39060282
    8295 8wgh:B (2.4) BS07 SF4 N/A GO:0000287 ... G9IB61 39060282
    8296 8wgh:C (2.4) BS01 SF4 N/A GO:0009055 ... A4QJG7 39060282
    8297 8wgh:C (2.4) BS02 SF4 N/A GO:0009055 ... A4QJG7 39060282
    8298 8wm6:A (2.7) BS48 SF4 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    8299 8wm6:B (2.7) BS06 SF4 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    8300 8wm6:C (2.7) BS01 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    8301 8wm6:C (2.7) BS02 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    8302 8wmj:A (3.0) BS54 SF4 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    8303 8wmj:B (3.0) BS08 SF4 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    8304 8wmj:C (3.0) BS01 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    8305 8wmj:C (3.0) BS02 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    8306 8wmv:A (2.94) BS50 SF4 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    8307 8wmv:B (2.94) BS06 SF4 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    8308 8wmv:C (2.94) BS01 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    8309 8wmv:C (2.94) BS02 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    8310 8wmw:A (3.3) BS51 SF4 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    8311 8wmw:B (3.3) BS05 SF4 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    8312 8wmw:C (3.3) BS01 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    8313 8wmw:C (3.3) BS02 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    8314 8x2j:B (2.7) BS03 SF4 ? N/A A9WEV3 38299372
    8315 8x2j:B (2.7) BS04 SF4 ? N/A A9WEV3 38299372
    8316 8x2j:B (2.7) BS05 SF4 ? N/A A9WEV3 38299372
    8317 8x9d:A (2.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    8318 8x9e:A (2.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    8319 8x9f:A (2.48) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    8320 8x9g:A (3.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    8321 8x9h:A (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    8322 8xcg:L (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    8323 8xcg:N (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    8324 8xcg:f (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    8325 9b00:1d (2.8) BS02 SF4 N/A N/A P80373 39019034
    8326 9b00:2d (2.8) BS03 SF4 N/A N/A P80373 39019034
    8327 9b8s:A (5.01) BS03 SF4 N/A N/A Q07864 39245668
    8328 9b8t:A (2.95) BS05 SF4 N/A N/A Q9Y5S4 39245668
    8329 9c8v:B (3.39) BS01 SF4 N/A N/A P49643 N/A
    8330 9f6d:A (3.6) BS03 SF4 N/A N/A Q07864 39112807
    8331 9f6e:A (3.74) BS03 SF4 N/A N/A Q07864 39112807
    8332 9f6f:A (3.75) BS03 SF4 N/A N/A Q07864 39112807
    8333 9f6i:A (3.3) BS03 SF4 N/A N/A Q07864 39112807
    8334 9f6j:A (3.9) BS03 SF4 N/A N/A Q07864 39112807
    8335 9f6k:A (4.2) BS02 SF4 N/A N/A Q07864 39112807
    8336 9f6l:A (3.9) BS03 SF4 N/A N/A Q07864 39112807
    8337 9fdj:B (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8338 9fdj:D (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8339 9fdk:B (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8340 9fdk:D (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8341 9fdv:B (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8342 9fdv:D (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8343 9fe0:B (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8344 9fe0:D (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8345 9fe5:B (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8346 9fe5:D (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8347 9fe7:B (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8348 9fe7:D (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8349 9fe8:B (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8350 9fe8:D (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8351 9fea:B (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8352 9fea:D (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8353 9fif:B (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8354 9fif:D (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8355 9fih:B (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8356 9fih:D (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8357 9fii:B (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8358 9fii:D (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8359 9fij:B (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8360 9fij:D (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8361 9fil:B (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    8362 9fil:D (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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