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BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 2afi:H (3.1) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    602 2afi:M (3.1) BS03 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    603 2afi:N (3.1) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    604 2afi:O (3.1) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    605 2afi:P (3.1) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    606 2akj:A (2.8) BS01 SF4 1.7.7.1 GO:0009507 ... P05314 16331965
    607 2ams:A (1.4) BS01 SF4 ? GO:0009055 ... P80176 N/A
    608 2aop:A (1.75) BS02 SF4 1.8.1.2 GO:0004783 ... P17846 9315848
    609 2b3x:A (2.54) BS01 SF4 4.2.1.3 GO:0000900 ... P21399 16407072
    610 2b3y:A (1.85) BS01 SF4 4.2.1.3 GO:0000900 ... P21399 16407072
    611 2b3y:B (1.85) BS01 SF4 4.2.1.3 GO:0000900 ... P21399 16407072
    612 2b76:B (3.3) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 16484232
    613 2b76:N (3.3) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 16484232
    614 2bh2:A (2.15) BS03 SF4 2.1.1.190 GO:0003723 ... P55135 15766524
    615 2bh2:B (2.15) BS03 SF4 2.1.1.190 GO:0003723 ... P55135 15766524
    616 2bs2:B (1.78) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 17024183
    617 2bs2:E (1.78) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 17024183
    618 2bs3:B (2.19) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 16380425
    619 2bs3:E (2.19) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 16380425
    620 2bs4:B (2.76) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 16380425
    621 2bs4:E (2.76) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 16380425
    622 2c3m:A (1.84) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    623 2c3m:A (1.84) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    624 2c3m:A (1.84) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    625 2c3m:B (1.84) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    626 2c3m:B (1.84) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    627 2c3m:B (1.84) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    628 2c3o:A (2.7) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    629 2c3o:A (2.7) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    630 2c3o:A (2.7) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    631 2c3o:B (2.7) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    632 2c3o:B (2.7) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    633 2c3o:B (2.7) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    634 2c3p:A (2.33) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    635 2c3p:A (2.33) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    636 2c3p:A (2.33) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    637 2c3p:B (2.33) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    638 2c3p:B (2.33) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    639 2c3p:B (2.33) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    640 2c3u:A (2.32) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    641 2c3u:A (2.32) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    642 2c3u:A (2.32) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    643 2c3u:B (2.32) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    644 2c3u:B (2.32) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    645 2c3u:B (2.32) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    646 2c3y:A (1.93) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    647 2c3y:A (1.93) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    648 2c3y:A (1.93) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    649 2c3y:B (1.93) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    650 2c3y:B (1.93) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    651 2c3y:B (1.93) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    652 2c42:A (1.78) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    653 2c42:A (1.78) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    654 2c42:A (1.78) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    655 2c42:B (1.78) BS01 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    656 2c42:B (1.78) BS02 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    657 2c42:B (1.78) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 16472741
    658 2d3y:A (1.55) BS01 SF4 3.2.2.- GO:0004844 ... Q5SJ65 17870091
    659 2ddg:A (2.1) BS03 SF4 3.2.2.- GO:0004844 ... Q5SJ65 17870091
    660 2dem:A (1.95) BS03 SF4 3.2.2.- GO:0004844 ... Q5SJ65 17870091
    661 2dp6:A (1.8) BS03 SF4 3.2.2.- GO:0004844 ... Q5SJ65 N/A
    662 2e7z:A (1.26) BS01 SF4 4.2.1.112 GO:0016491 ... Q71EW5 17360611
    663 2fb2:A (2.25) BS02 SF4 4.1.99.22 GO:0003824 ... P69848 16632608
    664 2fb2:A (2.25) BS03 SF4 4.1.99.22 GO:0003824 ... P69848 16632608
    665 2fb2:B (2.25) BS02 SF4 4.1.99.22 GO:0003824 ... P69848 16632608
    666 2fb2:B (2.25) BS03 SF4 4.1.99.22 GO:0003824 ... P69848 16632608
    667 2fb3:A (2.349) BS02 SF4 4.1.99.22 GO:0003824 ... P69848 16632608
    668 2fb3:A (2.349) BS03 SF4 4.1.99.22 GO:0003824 ... P69848 16632608
    669 2fb3:B (2.349) BS02 SF4 4.1.99.22 GO:0003824 ... P69848 16632608
    670 2fb3:B (2.349) BS03 SF4 4.1.99.22 GO:0003824 ... P69848 16632608
    671 2fbw:B (2.06) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 16371358
    672 2fbw:O (2.06) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 16371358
    673 2fd2:A (1.9) BS01 SF4 ? GO:0003677 ... P00214 1939185
    674 2fdn:A (0.94) BS01 SF4 ? GO:0009055 ... P00198 9405040
    675 2fdn:A (0.94) BS02 SF4 ? GO:0009055 ... P00198 9405040
    676 2fgo:A (1.32) BS01 SF4 ? GO:0005737 ... Q9I6D2 16596388
    677 2fgo:A (1.32) BS02 SF4 ? GO:0005737 ... Q9I6D2 16596388
    678 2fja:B (2.0) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    679 2fja:B (2.0) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    680 2fja:D (2.0) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    681 2fja:D (2.0) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    682 2fjb:B (1.7) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    683 2fjb:B (1.7) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    684 2fjb:D (1.7) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    685 2fjb:D (1.7) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    686 2fjd:B (1.84) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    687 2fjd:B (1.84) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    688 2fjd:D (1.84) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    689 2fjd:D (1.84) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    690 2fje:B (1.8) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    691 2fje:B (1.8) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    692 2fje:D (1.8) BS01 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    693 2fje:D (1.8) BS02 SF4 1.8.99.2 GO:0016491 ... O28604 16503650
    694 2fla:A (0.95) BS01 SF4 ? GO:0009055 ... P80176 N/A
    695 2frv:A (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    696 2frv:A (2.54) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    697 2frv:B (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12944 N/A
    698 2frv:C (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    699 2frv:C (2.54) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    700 2frv:D (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12944 N/A
    701 2frv:E (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    702 2frv:E (2.54) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    703 2frv:F (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12944 N/A
    704 2frv:G (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    705 2frv:G (2.54) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    706 2frv:H (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12944 N/A
    707 2frv:I (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    708 2frv:I (2.54) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    709 2frv:J (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12944 N/A
    710 2frv:L (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12944 N/A
    711 2frv:S (2.54) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    712 2frv:S (2.54) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 N/A
    713 2fug:1 (3.3) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 16469879
    714 2fug:3 (3.3) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    715 2fug:3 (3.3) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    716 2fug:3 (3.3) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    717 2fug:6 (3.3) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 16469879
    718 2fug:9 (3.3) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 16469879
    719 2fug:9 (3.3) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 16469879
    720 2fug:A (3.3) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 16469879
    721 2fug:C (3.3) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    722 2fug:C (3.3) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    723 2fug:C (3.3) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    724 2fug:F (3.3) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 16469879
    725 2fug:G (3.3) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 16469879
    726 2fug:G (3.3) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 16469879
    727 2fug:J (3.3) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 16469879
    728 2fug:L (3.3) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    729 2fug:L (3.3) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    730 2fug:L (3.3) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    731 2fug:O (3.3) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 16469879
    732 2fug:P (3.3) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 16469879
    733 2fug:P (3.3) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 16469879
    734 2fug:S (3.3) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 16469879
    735 2fug:U (3.3) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    736 2fug:U (3.3) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    737 2fug:U (3.3) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 16469879
    738 2fug:X (3.3) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 16469879
    739 2fug:Y (3.3) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 16469879
    740 2fug:Y (3.3) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 16469879
    741 2g36:A (2.5) BS01 SF4 6.1.1.2 GO:0000166 ... Q9WYW2 20944229
    742 2gep:A (1.9) BS02 SF4 1.8.1.2 GO:0004783 ... P17846 9315849
    743 2gmh:A (2.5) BS01 SF4 1.5.5.1 GO:0004174 ... P55931 17050691
    744 2gmh:B (2.5) BS01 SF4 1.5.5.1 GO:0004174 ... P55931 17050691
    745 2gmj:A (2.6) BS01 SF4 1.5.5.1 GO:0004174 ... P55931 17050691
    746 2gmj:B (2.6) BS01 SF4 1.5.5.1 GO:0004174 ... P55931 17050691
    747 2goy:A (2.7) BS01 SF4 1.8.4.10 GO:0000103 ... O05927 17010373
    748 2goy:B (2.7) BS01 SF4 1.8.4.10 GO:0000103 ... O05927 17010373
    749 2goy:C (2.7) BS01 SF4 1.8.4.10 GO:0000103 ... O05927 17010373
    750 2goy:D (2.7) BS01 SF4 1.8.4.10 GO:0000103 ... O05927 17010373
    751 2goy:E (2.7) BS01 SF4 1.8.4.10 GO:0000103 ... O05927 17010373
    752 2goy:F (2.7) BS01 SF4 1.8.4.10 GO:0000103 ... O05927 17010373
    753 2goy:G (2.7) BS01 SF4 1.8.4.10 GO:0000103 ... O05927 17010373
    754 2goy:H (2.7) BS01 SF4 1.8.4.10 GO:0000103 ... O05927 17010373
    755 2h88:B (1.74) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    756 2h88:O (1.74) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    757 2h89:B (2.4) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    758 2hip:A (2.5) BS01 SF4 ? GO:0009055 ... P04168 1917989
    759 2hip:B (2.5) BS01 SF4 ? GO:0009055 ... P04168 1917989
    760 2iv2:X (2.27) BS01 SF4 1.17.98.4 GO:0003954 ... P07658 16830149
    761 2ivf:A (1.88) BS01 SF4 1.17.99.2 GO:0016491 ... Q5P5I0 16962969
    762 2ivf:B (1.88) BS02 SF4 1.17.99.2 GO:0009055 ... Q5P5I1 16962969
    763 2ivf:B (1.88) BS03 SF4 1.17.99.2 GO:0009055 ... Q5P5I1 16962969
    764 2ivf:B (1.88) BS04 SF4 1.17.99.2 GO:0009055 ... Q5P5I1 16962969
    765 2jh3:A (1.9) BS01 SF4 ? GO:0005840 ... Q9RS86 17448684
    766 2jh3:B (1.9) BS01 SF4 ? GO:0005840 ... Q9RS86 17448684
    767 2jh3:C (1.9) BS01 SF4 ? GO:0005840 ... Q9RS86 17448684
    768 2jh3:D (1.9) BS01 SF4 ? GO:0005840 ... Q9RS86 17448684
    769 2jim:A (2.45) BS01 SF4 1.9.6.1 GO:0005506 ... P81186 18327621
    770 2jio:A (2.2) BS01 SF4 1.9.6.1 GO:0005506 ... P81186 18327621
    771 2jip:A (2.3) BS01 SF4 1.9.6.1 GO:0005506 ... P81186 18327621
    772 2jiq:A (2.44) BS01 SF4 1.9.6.1 GO:0005506 ... P81186 18327621
    773 2jir:A (2.35) BS01 SF4 1.9.6.1 GO:0005506 ... P81186 18327621
    774 2n0s:A (-1.00) BS01 SF4 1.18.99.1 N/A Q9FYU1 26010059
    775 2nap:A (1.9) BS01 SF4 1.9.6.1 GO:0005506 ... P81186 10368307
    776 2nip:A (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 9677296
    777 2nip:B (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 9677296
    778 2nya:A (2.5) BS01 SF4 1.9.6.1 GO:0005506 ... P33937 17130127
    779 2nya:F (2.5) BS01 SF4 1.9.6.1 GO:0005506 ... P33937 17130127
    780 2o01:A (3.4) BS40 SF4 1.97.1.12 GO:0000287 ... P05310 17476261
    781 2o01:B (3.4) BS45 SF4 1.97.1.12 GO:0000287 ... P05311 17476261
    782 2o01:C (3.4) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 17476261
    783 2o01:C (3.4) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 17476261
    784 2pda:A (3.0) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    785 2pda:A (3.0) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    786 2pda:A (3.0) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    787 2pda:B (3.0) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    788 2pda:B (3.0) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    789 2pda:B (3.0) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    790 2pps:B (4.0) BS01 SF4 N/A N/A N/A 8901876
    791 2pps:C (4.0) BS01 SF4 N/A N/A N/A 8901876
    792 2pps:C (4.0) BS02 SF4 N/A N/A N/A 8901876
    793 2pu9:A (1.65) BS01 SF4 1.8.7.2 GO:0005515 ... Q55389 17611542
    794 2puk:A (3.0) BS01 SF4 1.8.7.2 GO:0005515 ... Q55389 17611542
    795 2puk:E (3.0) BS01 SF4 1.8.7.2 GO:0005515 ... Q55389 17611542
    796 2puo:A (1.7) BS01 SF4 1.8.7.2 GO:0005515 ... Q55389 17611542
    797 2pvd:A (1.95) BS01 SF4 1.8.7.2 GO:0005515 ... Q55389 17611542
    798 2pvg:A (2.4) BS01 SF4 1.8.7.2 GO:0005515 ... Q55389 17611542
    799 2pvo:A (3.4) BS01 SF4 1.8.7.2 GO:0005515 ... Q55389 17611542
    800 2tmd:A (2.4) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 1551870
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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