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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1ogy:I (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    402 1ogy:K (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    403 1ogy:M (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    404 1ogy:O (3.2) BS01 SF4 1.9.6.1 GO:0005506 ... Q53176 14528294
    405 1olt:A (2.07) BS01 SF4 1.3.98.3 GO:0003824 ... P32131 14633981
    406 1orn:A (1.7) BS03 SF4 N/A GO:0003677 ... N/A 12840008
    407 1orp:A (2.2) BS03 SF4 N/A GO:0003677 ... N/A 12840008
    408 1p59:A (2.5) BS03 SF4 N/A GO:0003677 ... N/A 12840008
    409 1pc4:A (1.65) BS01 SF4 ? GO:0003677 ... P00214 12962482
    410 1pc5:A (1.8) BS01 SF4 ? GO:0003677 ... P00214 12962482
    411 1pih:A (-1.00) BS01 SF4 ? GO:0009055 ... P04168 7957187
    412 1pij:A (-1.00) BS01 SF4 ? GO:0009055 ... P04168 7957187
    413 1ps9:A (2.2) BS01 SF4 1.3.1.34 GO:0005515 ... P42593 12840019
    414 1q16:A (1.9) BS04 SF4 1.7.5.1 GO:0005515 ... P09152 12910261
    415 1q16:B (1.9) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 12910261
    416 1q16:B (1.9) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 12910261
    417 1q16:B (1.9) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 12910261
    418 1qlb:B (2.33) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 10586875
    419 1qlb:E (2.33) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 10586875
    420 1qzv:C (4.44) BS01 SF4 N/A N/A N/A 14668855
    421 1qzv:C (4.44) BS02 SF4 N/A N/A N/A 14668855
    422 1qzv:R (4.44) BS01 SF4 N/A N/A N/A 14668855
    423 1qzv:R (4.44) BS02 SF4 N/A N/A N/A 14668855
    424 1r27:A (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P09152 14725769
    425 1r27:B (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    426 1r27:B (2.0) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    427 1r27:B (2.0) BS04 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    428 1r27:C (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P09152 14725769
    429 1r27:D (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    430 1r27:D (2.0) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    431 1r27:D (2.0) BS04 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    432 1r30:A (3.4) BS02 SF4 2.8.1.6 GO:0003824 ... P12996 14704425
    433 1r30:B (3.4) BS02 SF4 2.8.1.6 GO:0003824 ... P12996 14704425
    434 1rgv:A (2.9) BS01 SF4 ? GO:0046872 ... O88151 14747735
    435 1rgv:A (2.9) BS02 SF4 ? GO:0046872 ... O88151 14747735
    436 1rm6:B (1.6) BS02 SF4 1.1.7.1 GO:0016491 ... O33820 15576037
    437 1rm6:E (1.6) BS02 SF4 1.1.7.1 GO:0016491 ... O33820 15576037
    438 1rof:A (-1.00) BS01 SF4 ? GO:0005506 ... P46797 8647119
    439 1rrq:A (2.22) BS04 SF4 3.2.2.31 GO:0000701 ... P83847 14961129
    440 1rrs:A (2.4) BS04 SF4 3.2.2.31 GO:0000701 ... P83847 14961129
    441 1ru3:A (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P83789 14699043
    442 1rw4:A (2.5) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 14967020
    443 1sb3:B (2.2) BS02 SF4 1.1.7.1 GO:0016491 ... O33820 15576037
    444 1sb3:E (2.2) BS02 SF4 1.1.7.1 GO:0016491 ... O33820 15576037
    445 1siw:A (2.2) BS02 SF4 1.7.5.1 GO:0005515 ... P09152 15122898
    446 1siw:B (2.2) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 15122898
    447 1siw:B (2.2) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 15122898
    448 1siw:B (2.2) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 15122898
    449 1su6:A (1.64) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    450 1su7:A (1.12) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    451 1su8:A (1.1) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    452 1suf:A (1.15) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 15113209
    453 1tv7:A (2.8) BS01 SF4 4.1.99.22 GO:0003824 ... P69848 15317939
    454 1tv7:A (2.8) BS02 SF4 4.1.99.22 GO:0003824 ... P69848 15317939
    455 1tv7:B (2.8) BS01 SF4 4.1.99.22 GO:0003824 ... P69848 15317939
    456 1tv7:B (2.8) BS02 SF4 4.1.99.22 GO:0003824 ... P69848 15317939
    457 1tv8:A (2.2) BS02 SF4 4.1.99.22 GO:0003824 ... P65388 15317939
    458 1tv8:A (2.2) BS03 SF4 4.1.99.22 GO:0003824 ... P65388 15317939
    459 1tv8:B (2.2) BS02 SF4 4.1.99.22 GO:0003824 ... P65388 15317939
    460 1tv8:B (2.2) BS03 SF4 4.1.99.22 GO:0003824 ... P65388 15317939
    461 1u8v:A (1.6) BS01 SF4 4.2.1.120
    5.3.3.3    		 GO:0016491 ... P55792 15496473
    462 1u8v:B (1.6) BS02 SF4 4.2.1.120
    5.3.3.3    		 GO:0016491 ... P55792 15496473
    463 1u8v:C (1.6) BS01 SF4 4.2.1.120
    5.3.3.3    		 GO:0016491 ... P55792 15496473
    464 1u8v:D (1.6) BS02 SF4 4.2.1.120
    5.3.3.3    		 GO:0016491 ... P55792 15496473
    465 1ubh:L (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    466 1ubh:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    467 1ubh:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    468 1ubj:L (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    469 1ubj:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    470 1ubj:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    471 1ubk:L (1.18) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    472 1ubk:S (1.18) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    473 1ubk:S (1.18) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    474 1ubl:L (1.2) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    475 1ubl:S (1.2) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    476 1ubl:S (1.2) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    477 1ubm:L (1.4) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    478 1ubm:S (1.4) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    479 1ubm:S (1.4) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    480 1ubo:L (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    481 1ubo:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    482 1ubo:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    483 1ubr:L (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    484 1ubr:S (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    485 1ubr:S (1.34) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    486 1ubt:L (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    487 1ubt:S (1.34) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    488 1ubt:S (1.34) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    489 1ubu:L (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 12296727
    490 1ubu:S (1.35) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    491 1ubu:S (1.35) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 12296727
    492 1ui0:A (1.5) BS01 SF4 3.2.2.27 GO:0004844 ... Q5SKC5 14556741
    493 1ui1:A (2.8) BS01 SF4 3.2.2.27 GO:0004844 ... Q5SKC5 14556741
    494 1upx:A (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... Q01770 14646063
    495 1upx:B (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... Q01770 14646063
    496 1uwv:A (1.95) BS01 SF4 2.1.1.190 GO:0003723 ... P55135 15016356
    497 1vjw:A (1.75) BS01 SF4 ? GO:0005506 ... P46797 8939753
    498 1vk2:A (1.9) BS01 SF4 3.2.2.27 GO:0004844 ... Q9WYY1 N/A
    499 1vrl:A (2.5) BS04 SF4 3.2.2.31 GO:0000701 ... P83847 14961129
    500 1vy4:AD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    501 1vy4:CD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    502 1vy5:AD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25132179
    503 1vy5:CD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25132179
    504 1vy6:AD (2.9) BS02 SF4 ? GO:0003723 ... P80373 25132179
    505 1vy6:CD (2.9) BS02 SF4 ? GO:0003723 ... P80373 25132179
    506 1vy7:AD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25132179
    507 1vy7:CD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25132179
    508 1w9m:A (1.35) BS01 SF4 1.7.99.1 GO:0003824 ... P31101 18560155
    509 1wef:A (1.9) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 15326180
    510 1weg:A (1.8) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 15326180
    511 1wei:A (1.45) BS02 SF4 3.2.2.31 GO:0003677 ... P17802 15326180
    512 1wuh:L (1.24) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 N/A
    513 1wuh:S (1.24) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 N/A
    514 1wuh:S (1.24) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 N/A
    515 1wui:L (1.04) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 16271886
    516 1wui:S (1.04) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 16271886
    517 1wui:S (1.04) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 16271886
    518 1wuj:L (1.4) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 16271886
    519 1wuj:S (1.4) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 16271886
    520 1wuj:S (1.4) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 16271886
    521 1wuk:L (1.1) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 16271886
    522 1wuk:S (1.1) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 16271886
    523 1wuk:S (1.1) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 16271886
    524 1wul:L (1.5) BS01 SF4 1.12.2.1 GO:0008901 ... P21852 16271886
    525 1wul:S (1.5) BS01 SF4 1.12.2.1 GO:0008901 ... P21853 16271886
    526 1wul:S (1.5) BS02 SF4 1.12.2.1 GO:0008901 ... P21853 16271886
    527 1xcp:A (3.2) BS03 SF4 1.18.6.1 GO:0005524 ... P00459 15650336
    528 1xcp:B (3.2) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 15650336
    529 1xcp:C (3.2) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 15650336
    530 1xcp:D (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15650336
    531 1xd8:A (2.7) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    532 1xd8:B (2.7) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    533 1xd9:A (2.8) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    534 1xd9:B (2.8) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    535 1xdb:A (2.8) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    536 1xdb:B (2.8) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 15549494
    537 1y4z:A (2.0) BS04 SF4 1.7.5.1 GO:0005515 ... P09152 15615728
    538 1y4z:B (2.0) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    539 1y4z:B (2.0) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    540 1y5i:A (1.9) BS04 SF4 1.7.5.1 GO:0005515 ... P09152 15615728
    541 1y5i:B (1.9) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    542 1y5i:B (1.9) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    543 1y5i:B (1.9) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    544 1y5l:A (2.5) BS04 SF4 1.7.5.1 GO:0005515 ... P09152 15615728
    545 1y5l:B (2.5) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    546 1y5l:B (2.5) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    547 1y5l:B (2.5) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    548 1y5n:A (2.5) BS04 SF4 1.7.5.1 GO:0005515 ... P09152 15615728
    549 1y5n:B (2.5) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    550 1y5n:B (2.5) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    551 1y5n:B (2.5) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 15615728
    552 1yq3:B (2.2) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 16371358
    553 1yq4:B (2.33) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 16371358
    554 1yq9:A (2.35) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 15803334
    555 1yq9:A (2.35) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 15803334
    556 1yq9:B (2.35) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 15803334
    557 1yq9:B (2.35) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 15803334
    558 1yq9:H (2.35) BS01 SF4 1.12.2.1 GO:0008901 ... P12944 15803334
    559 1yq9:I (2.35) BS01 SF4 1.12.2.1 GO:0008901 ... P12944 15803334
    560 1yqw:A (1.83) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    561 1yqw:A (1.83) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    562 1yqw:B (1.83) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    563 1yqw:B (1.83) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    564 1yqw:C (1.83) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    565 1yqw:C (1.83) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    566 1yqw:Q (1.83) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 15803334
    567 1yqw:S (1.83) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 15803334
    568 1yrq:A (2.1) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    569 1yrq:A (2.1) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    570 1yrq:B (2.1) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    571 1yrq:B (2.1) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    572 1yrq:C (2.1) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    573 1yrq:C (2.1) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    574 1yrq:D (2.1) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    575 1yrq:D (2.1) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    576 1yrq:F (2.1) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    577 1yrq:F (2.1) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    578 1yrq:G (2.1) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    579 1yrq:G (2.1) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 15803334
    580 1yrq:H (2.1) BS02 SF4 1.12.2.1 GO:0008901 ... P18188 15803334
    581 1yrq:J (2.1) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 15803334
    582 1yrq:M (2.1) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 15803334
    583 1yrq:N (2.1) BS01 SF4 1.12.2.1 GO:0008901 ... P18188 15803334
    584 1zj8:A (2.8) BS01 SF4 1.8.7.1 GO:0000103 ... P9WJ03 15917234
    585 1zj8:B (2.8) BS01 SF4 1.8.7.1 GO:0000103 ... P9WJ03 15917234
    586 1zj9:A (2.9) BS01 SF4 1.8.7.1 GO:0000103 ... P9WJ03 15917234
    587 1zj9:B (2.9) BS01 SF4 1.8.7.1 GO:0000103 ... P9WJ03 15917234
    588 1zoy:B (2.4) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 15989954
    589 1zp0:B (3.5) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 15989954
    590 2a5h:A (2.1) BS04 SF4 5.4.3.2 GO:0003824 ... Q9XBQ8 16166264
    591 2a5h:B (2.1) BS05 SF4 5.4.3.2 GO:0003824 ... Q9XBQ8 16166264
    592 2a5h:C (2.1) BS04 SF4 5.4.3.2 GO:0003824 ... Q9XBQ8 16166264
    593 2a5h:D (2.1) BS06 SF4 5.4.3.2 GO:0003824 ... Q9XBQ8 16166264
    594 2abk:A (1.85) BS01 SF4 4.2.99.18 GO:0000703 ... P0AB83 7664751
    595 2acz:B (3.1) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 16407191
    596 2afh:E (2.1) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    597 2afh:F (2.1) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    598 2afi:E (3.1) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    599 2afi:F (3.1) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    600 2afi:G (3.1) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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