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BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 7dr2:dA (3.8) BS46 SF4 1.97.1.12 GO:0000287 ... A0A097PBL3 N/A
    5202 7dr2:dB (3.8) BS07 SF4 1.97.1.12 GO:0000287 ... P48113 N/A
    5203 7dr2:dC (3.8) BS01 SF4 1.97.1.12 GO:0009055 ... P31173 N/A
    5204 7dr2:dC (3.8) BS02 SF4 1.97.1.12 GO:0009055 ... P31173 N/A
    5205 7du2:P (3.35) BS01 SF4 ? GO:0000428 ... Q9H1D9 33674783
    5206 7dwq:A (3.3) BS41 SF4 1.97.1.12 GO:0000287 ... B0C474 34002536
    5207 7dwq:B (3.3) BS06 SF4 1.97.1.12 GO:0000287 ... B0C475 34002536
    5208 7dwq:C (3.3) BS01 SF4 1.97.1.12 GO:0009055 ... B0CB42 34002536
    5209 7dwq:C (3.3) BS02 SF4 1.97.1.12 GO:0009055 ... B0CB42 34002536
    5210 7dz7:A (2.84) BS46 SF4 1.97.1.12 GO:0000287 ... P12154 34239095
    5211 7dz7:B (2.84) BS07 SF4 1.97.1.12 GO:0000287 ... P09144 34239095
    5212 7dz7:C (2.84) BS01 SF4 1.97.1.12 GO:0009055 ... Q00914 34239095
    5213 7dz7:C (2.84) BS02 SF4 1.97.1.12 GO:0009055 ... Q00914 34239095
    5214 7dz8:A (3.16) BS46 SF4 1.97.1.12 GO:0000287 ... P12154 34239095
    5215 7dz8:B (3.16) BS07 SF4 1.97.1.12 GO:0000287 ... P09144 34239095
    5216 7dz8:C (3.16) BS01 SF4 1.97.1.12 GO:0009055 ... Q00914 34239095
    5217 7dz8:C (3.16) BS02 SF4 1.97.1.12 GO:0009055 ... Q00914 34239095
    5218 7e0l:A (2.82) BS02 SF4 1.7.99.1 GO:0003824 ... D9PYV4 N/A
    5219 7e0l:B (2.82) BS02 SF4 1.7.99.1 GO:0003824 ... D9PYV4 N/A
    5220 7e0l:K (2.82) BS02 SF4 1.7.99.1 GO:0003824 ... D9PYV4 N/A
    5221 7e0l:M (2.82) BS02 SF4 1.7.99.1 GO:0003824 ... D9PYV4 N/A
    5222 7e1q:A (1.7) BS01 SF4 ? GO:0000166 ... A0A0B2E3F3 34836944
    5223 7e1r:A (2.795) BS02 SF4 ? GO:0000166 ... B5Z7D6 34836944
    5224 7e1r:C (2.795) BS02 SF4 ? GO:0000166 ... B5Z7D6 34836944
    5225 7e1s:A (2.31) BS02 SF4 ? GO:0000166 ... B5Z7D6 34836944
    5226 7e1s:C (2.31) BS03 SF4 ? GO:0000166 ... B5Z7D6 34836944
    5227 7e5z:A (3.6) BS04 SF4 1.17.1.9 GO:0008863 ... C5ATT7 N/A
    5228 7e5z:A (3.6) BS05 SF4 1.17.1.9 GO:0008863 ... C5ATT7 N/A
    5229 7e5z:A (3.6) BS06 SF4 1.17.1.9 GO:0008863 ... C5ATT7 N/A
    5230 7e5z:B (3.6) BS02 SF4 1.2.1.2 GO:0000166 ... C5ATT6 N/A
    5231 7ef8:A (2.45) BS03 SF4 3.2.2.31 GO:0003677 ... Q99P21 34142156
    5232 7ef9:A (1.97) BS03 SF4 3.2.2.31 GO:0003677 ... Q99P21 34142156
    5233 7egb:7 (3.3) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 33795473
    5234 7egc:7 (3.9) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 33795473
    5235 7ena:7 (4.07) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 33958484
    5236 7enc:7 (4.13) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 33958484
    5237 7err:A (2.26) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 N/A
    5238 7eu3:8 (3.7) BS01 SF4 N/A GO:0051536 ... N/A 34879391
    5239 7ew6:A (3.4) BS42 SF4 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    5240 7ew6:B (3.4) BS03 SF4 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    5241 7ew6:C (3.4) BS01 SF4 1.97.1.12 GO:0009055 ... P69416 34879391
    5242 7ew6:C (3.4) BS02 SF4 1.97.1.12 GO:0009055 ... P69416 34879391
    5243 7ewk:A (3.88) BS46 SF4 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    5244 7ewk:B (3.88) BS04 SF4 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    5245 7ewk:C (3.88) BS01 SF4 1.97.1.12 GO:0009055 ... P69416 34879391
    5246 7ewk:C (3.88) BS02 SF4 1.97.1.12 GO:0009055 ... P69416 34879391
    5247 7f4v:aA (2.04) BS46 SF4 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    5248 7f4v:aB (2.04) BS07 SF4 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    5249 7f4v:aC (2.04) BS01 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    5250 7f4v:aC (2.04) BS02 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    5251 7f4v:bA (2.04) BS46 SF4 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    5252 7f4v:bB (2.04) BS07 SF4 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    5253 7f4v:bC (2.04) BS01 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    5254 7f4v:bC (2.04) BS02 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    5255 7f4v:cA (2.04) BS46 SF4 1.97.1.12 GO:0000287 ... Q7NFT6 N/A
    5256 7f4v:cB (2.04) BS08 SF4 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    5257 7f4v:cC (2.04) BS01 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    5258 7f4v:cC (2.04) BS02 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    5259 7f9o:8 (4.5) BS01 SF4 ? GO:0051536 ... F2DD79 34879391
    5260 7f9o:A (4.5) BS42 SF4 1.97.1.12 GO:0000287 ... S4Z1K7 34879391
    5261 7f9o:B (4.5) BS03 SF4 1.97.1.12 GO:0000287 ... S4Z289 34879391
    5262 7f9o:C (4.5) BS01 SF4 1.97.1.12 GO:0009055 ... S4YZ47 34879391
    5263 7f9o:C (4.5) BS02 SF4 1.97.1.12 GO:0009055 ... S4YZ47 34879391
    5264 7f9o:e (4.5) BS46 SF4 1.97.1.12 GO:0000287 ... S4Z1K7 34879391
    5265 7f9o:f (4.5) BS04 SF4 1.97.1.12 GO:0000287 ... S4Z289 34879391
    5266 7f9o:g (4.5) BS01 SF4 1.97.1.12 GO:0009055 ... S4YZ47 34879391
    5267 7f9o:g (4.5) BS02 SF4 1.97.1.12 GO:0009055 ... S4YZ47 34879391
    5268 7fd1:A (1.3) BS01 SF4 ? GO:0003677 ... P00214 10387068
    5269 7fdr:A (1.4) BS01 SF4 ? GO:0003677 ... P00214 10387068
    5270 7fix:A1 (1.97) BS46 SF4 1.97.1.12 GO:0000287 ... P0A405 36097054
    5271 7fix:A2 (1.97) BS46 SF4 1.97.1.12 GO:0000287 ... P0A405 36097054
    5272 7fix:A3 (1.97) BS46 SF4 1.97.1.12 GO:0000287 ... P0A405 36097054
    5273 7fix:B1 (1.97) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 36097054
    5274 7fix:B2 (1.97) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 36097054
    5275 7fix:B3 (1.97) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 36097054
    5276 7fix:C1 (1.97) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 36097054
    5277 7fix:C1 (1.97) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 36097054
    5278 7fix:C2 (1.97) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 36097054
    5279 7fix:C2 (1.97) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 36097054
    5280 7fix:C3 (1.97) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 36097054
    5281 7fix:C3 (1.97) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 36097054
    5282 7fji:P (3.6) BS01 SF4 ? GO:0000428 ... Q9H1D9 34675218
    5283 7fjj:P (3.6) BS01 SF4 ? GO:0000428 ... Q9H1D9 34675218
    5284 7gep:A (2.4) BS01 SF4 1.8.1.2 GO:0004783 ... P17846 9315849
    5285 7jmb:A (3.0) BS01 SF4 ? GO:0003824 ... O27899 33035363
    5286 7jmb:A (3.0) BS02 SF4 ? GO:0003824 ... O27899 33035363
    5287 7jmb:A (3.0) BS03 SF4 ? GO:0003824 ... O27899 33035363
    5288 7jmb:B (3.0) BS01 SF4 ? GO:0003824 ... O27899 33035363
    5289 7jmb:B (3.0) BS02 SF4 ? GO:0003824 ... O27899 33035363
    5290 7jmb:B (3.0) BS03 SF4 ? GO:0003824 ... O27899 33035363
    5291 7jql:1d (3.0) BS02 SF4 ? GO:0003723 ... P80373 32787108
    5292 7jql:2d (3.0) BS02 SF4 ? GO:0003723 ... P80373 32787108
    5293 7jqm:1d (3.05) BS02 SF4 ? GO:0003723 ... P80373 32787108
    5294 7jqm:2d (3.05) BS02 SF4 ? GO:0003723 ... P80373 32787108
    5295 7jz2:B (2.5) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 33408407
    5296 7jz2:F (2.5) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 33408407
    5297 7jz2:J (2.5) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 33408407
    5298 7k01:0 (3.9) BS01 SF4 3.6.4.12 GO:0000019 ... P06839 34099686
    5299 7k04:0 (9.25) BS01 SF4 3.6.4.12 GO:0000019 ... P06839 34099686
    5300 7kc0:A (3.2) BS03 SF4 2.7.7.7
    3.1.11.-
    GO:0000166 ... P15436 33203675
    5301 7kdx:A (1.791) BS01 SF4 ? GO:0003824 ... A0A6B9HEI0 35110734
    5302 7kdx:B (1.791) BS02 SF4 ? GO:0003824 ... A0A6B9HEI0 35110734
    5303 7kdy:A (1.939) BS01 SF4 ? GO:0003824 ... A0A6B9HEI0 35110734
    5304 7kdy:B (1.939) BS01 SF4 ? GO:0003824 ... A0A6B9HEI0 35110734
    5305 7kif:Z (2.94) BS03 SF4 ? GO:0003677 ... Q6MX01 34171296
    5306 7kim:Z (3.38) BS03 SF4 ? GO:0003677 ... Q6MX01 34171296
    5307 7koe:D (2.9) BS02 SF4 N/A GO:0005506 ... N/A 33372143
    5308 7koe:D (2.9) BS03 SF4 N/A GO:0005506 ... N/A 33372143
    5309 7koe:H (2.9) BS02 SF4 N/A GO:0005506 ... N/A 33372143
    5310 7koe:H (2.9) BS03 SF4 N/A GO:0005506 ... N/A 33372143
    5311 7ksq:A (2.8) BS41 SF4 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    5312 7ksq:B (2.8) BS05 SF4 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    5313 7ksq:C (2.8) BS01 SF4 1.97.1.12 GO:0009055 ... Q6YXQ2 35190662
    5314 7ksq:C (2.8) BS02 SF4 1.97.1.12 GO:0009055 ... Q6YXQ2 35190662
    5315 7kuf:A (2.6) BS03 SF4 ? GO:0003677 ... Q6MX01 34171298
    5316 7kuf:B (2.6) BS03 SF4 2.7.7.6 GO:0003700 ... P9WGI1
    P9WGY9
    34171298
    5317 7kug:A (1.55) BS01 SF4 ? N/A Q6MX01 34171298
    5318 7kug:C (1.55) BS01 SF4 ? N/A Q6MX01 34171298
    5319 7kux:A (2.8) BS42 SF4 1.97.1.12 GO:0000287 ... Q8MFA3 35190662
    5320 7kux:B (2.8) BS05 SF4 1.97.1.12 GO:0000287 ... Q8MFA2 35190662
    5321 7kux:C (2.8) BS01 SF4 1.97.1.12 GO:0009055 ... Q6YXQ2 35190662
    5322 7kux:C (2.8) BS02 SF4 1.97.1.12 GO:0009055 ... Q6YXQ2 35190662
    5323 7lbm:X (4.8) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 33707221
    5324 7lc5:A (1.5) BS01 SF4 1.17.99.6 GO:0006400 ... Q9WZJ0 34652139
    5325 7lc7:A (1.58) BS01 SF4 1.17.99.6 GO:0006400 ... Q9WZJ0 N/A
    5326 7lhr:A (3.11) BS01 SF4 1.8.4.10 GO:0003824 ... P9WIK3 34095667
    5327 7lhr:B (3.11) BS01 SF4 1.8.4.10 GO:0003824 ... P9WIK3 34095667
    5328 7lhs:A (3.11) BS01 SF4 1.8.4.10 GO:0003824 ... P9WIK3 34095667
    5329 7lhs:B (3.11) BS01 SF4 1.8.4.10 GO:0003824 ... P9WIK3 34095667
    5330 7lhu:A (3.09) BS01 SF4 1.8.4.10 GO:0003824 ... P9WIK3 34095667
    5331 7lhu:B (3.09) BS01 SF4 1.8.4.10 GO:0003824 ... P9WIK3 34095667
    5332 7ljs:A (2.0) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5333 7ljs:A (2.0) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5334 7ljs:A (2.0) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5335 7ljs:A (2.0) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5336 7ljs:B (2.0) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5337 7ljs:B (2.0) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5338 7ljs:B (2.0) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5339 7ljs:B (2.0) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5340 7ljs:C (2.0) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5341 7ljs:C (2.0) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5342 7ljs:C (2.0) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5343 7ljs:C (2.0) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5344 7ljs:D (2.0) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5345 7ljs:D (2.0) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5346 7ljs:D (2.0) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5347 7ljs:D (2.0) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5348 7ljt:A (1.98) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5349 7ljt:A (1.98) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5350 7ljt:A (1.98) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5351 7ljt:A (1.98) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5352 7ljt:B (1.98) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5353 7ljt:B (1.98) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5354 7ljt:B (1.98) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5355 7ljt:B (1.98) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5356 7ljt:C (1.98) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5357 7ljt:C (1.98) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5358 7ljt:C (1.98) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5359 7ljt:C (1.98) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5360 7ljt:D (1.98) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5361 7ljt:D (1.98) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5362 7ljt:D (1.98) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5363 7ljt:D (1.98) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5364 7lju:A (1.87) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5365 7lju:A (1.87) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5366 7lju:A (1.87) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5367 7lju:A (1.87) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5368 7lju:B (1.87) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5369 7lju:B (1.87) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5370 7lju:B (1.87) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5371 7lju:B (1.87) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5372 7lju:C (1.87) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5373 7lju:C (1.87) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5374 7lju:C (1.87) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5375 7lju:C (1.87) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5376 7lju:D (1.87) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5377 7lju:D (1.87) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5378 7lju:D (1.87) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5379 7lju:D (1.87) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 33755421
    5380 7lw7:A (2.5) BS01 SF4 3.1.-.- GO:0003677 ... Q9H790 34197737
    5381 7lw8:A (2.88) BS02 SF4 3.1.-.- GO:0003677 ... Q9H790 34197737
    5382 7lw9:A (2.71) BS02 SF4 3.1.-.- GO:0003677 ... Q9H790 34197737
    5383 7lwa:A (2.85) BS02 SF4 3.1.-.- GO:0003677 ... Q9H790 34197737
    5384 7lx0:A (2.96) BS45 SF4 1.97.1.12 GO:0000287 ... G6FME9 N/A
    5385 7lx0:B (2.96) BS07 SF4 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    5386 7lx0:C (2.96) BS01 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    5387 7lx0:C (2.96) BS02 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    5388 7lx0:G (2.96) BS45 SF4 1.97.1.12 GO:0000287 ... G6FME9 N/A
    5389 7lx0:H (2.96) BS07 SF4 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    5390 7lx0:N (2.96) BS01 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    5391 7lx0:N (2.96) BS02 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    5392 7lx0:a (2.96) BS45 SF4 1.97.1.12 GO:0000287 ... G6FME9 N/A
    5393 7lx0:b (2.96) BS07 SF4 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    5394 7lx0:c (2.96) BS01 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    5395 7lx0:c (2.96) BS02 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    5396 7lxd:A (4.11) BS01 SF4 2.7.7.7 GO:0000166 ... P14284 34174285
    5397 7m1n:A (2.06) BS01 SF4 ? GO:0046872 ... Q75VV9 N/A
    5398 7m1n:B (2.06) BS01 SF4 ? GO:0046872 ... Q75VV9 N/A
    5399 7m1o:A (1.98389) BS01 SF4 ? GO:0046872 ... Q75VV9 N/A
    5400 7m1o:B (1.98389) BS01 SF4 ? GO:0046872 ... Q75VV9 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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