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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 6zjy:9 (5.5) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    4602 6zk9:1 (2.3) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4603 6zk9:3 (2.3) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4604 6zk9:3 (2.3) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4605 6zk9:4 (2.3) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4606 6zk9:6 (2.3) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4607 6zk9:9 (2.3) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4608 6zk9:9 (2.3) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4609 6zkc:1 (3.1) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4610 6zkc:3 (3.1) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4611 6zkc:3 (3.1) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4612 6zkc:4 (3.1) BS02 SF4 N/A GO:0016651 ... N/A 32972993
    4613 6zkc:6 (3.1) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4614 6zkc:9 (3.1) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4615 6zkc:9 (3.1) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4616 6zkd:1 (2.7) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4617 6zkd:3 (2.7) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4618 6zkd:3 (2.7) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4619 6zkd:4 (2.7) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4620 6zkd:6 (2.7) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4621 6zkd:9 (2.7) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4622 6zkd:9 (2.7) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4623 6zke:1 (2.6) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4624 6zke:3 (2.6) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4625 6zke:3 (2.6) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4626 6zke:4 (2.6) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4627 6zke:6 (2.6) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4628 6zke:9 (2.6) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4629 6zke:9 (2.6) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4630 6zkf:1 (2.8) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4631 6zkf:3 (2.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4632 6zkf:3 (2.8) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4633 6zkf:4 (2.8) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4634 6zkf:6 (2.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4635 6zkf:9 (2.8) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4636 6zkf:9 (2.8) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4637 6zkg:1 (3.4) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4638 6zkg:3 (3.4) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4639 6zkg:3 (3.4) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4640 6zkg:4 (3.4) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4641 6zkg:6 (3.4) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4642 6zkg:9 (3.4) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4643 6zkg:9 (3.4) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4644 6zkh:1 (3.0) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4645 6zkh:3 (3.0) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4646 6zkh:3 (3.0) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4647 6zkh:4 (3.0) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4648 6zkh:6 (3.0) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4649 6zkh:9 (3.0) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4650 6zkh:9 (3.0) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4651 6zki:1 (2.8) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4652 6zki:3 (2.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4653 6zki:3 (2.8) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4654 6zki:4 (2.8) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4655 6zki:6 (2.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4656 6zki:9 (2.8) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4657 6zki:9 (2.8) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4658 6zkj:1 (3.0) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4659 6zkj:3 (3.0) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4660 6zkj:3 (3.0) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4661 6zkj:4 (3.0) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4662 6zkj:6 (3.0) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4663 6zkj:9 (3.0) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4664 6zkj:9 (3.0) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4665 6zkk:1 (3.7) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4666 6zkk:3 (3.7) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4667 6zkk:3 (3.7) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4668 6zkk:4 (3.7) BS02 SF4 N/A GO:0016651 ... N/A 32972993
    4669 6zkk:6 (3.7) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4670 6zkk:9 (3.7) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4671 6zkk:9 (3.7) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4672 6zkl:1 (3.1) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4673 6zkl:3 (3.1) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4674 6zkl:3 (3.1) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4675 6zkl:4 (3.1) BS02 SF4 N/A GO:0016651 ... N/A 32972993
    4676 6zkl:6 (3.1) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4677 6zkl:9 (3.1) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4678 6zkl:9 (3.1) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4679 6zkm:1 (2.8) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4680 6zkm:3 (2.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4681 6zkm:3 (2.8) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4682 6zkm:4 (2.8) BS02 SF4 N/A GO:0016651 ... N/A 32972993
    4683 6zkm:6 (2.8) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4684 6zkm:9 (2.8) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4685 6zkm:9 (2.8) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4686 6zkn:1 (2.9) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4687 6zkn:3 (2.9) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4688 6zkn:3 (2.9) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4689 6zkn:4 (2.9) BS02 SF4 N/A GO:0016651 ... N/A 32972993
    4690 6zkn:6 (2.9) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4691 6zkn:9 (2.9) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4692 6zkn:9 (2.9) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4693 6zko:1 (3.8) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4694 6zko:3 (3.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4695 6zko:3 (3.8) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4696 6zko:4 (3.8) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4697 6zko:6 (3.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4698 6zko:9 (3.8) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4699 6zko:9 (3.8) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4700 6zkp:1 (3.2) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4701 6zkp:3 (3.2) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4702 6zkp:3 (3.2) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4703 6zkp:4 (3.2) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4704 6zkp:6 (3.2) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4705 6zkp:9 (3.2) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4706 6zkp:9 (3.2) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4707 6zkq:1 (3.3) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4708 6zkq:3 (3.3) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4709 6zkq:3 (3.3) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4710 6zkq:4 (3.3) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4711 6zkq:6 (3.3) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4712 6zkq:9 (3.3) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4713 6zkq:9 (3.3) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4714 6zkr:1 (3.5) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4715 6zkr:3 (3.5) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4716 6zkr:3 (3.5) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4717 6zkr:4 (3.5) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4718 6zkr:6 (3.5) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4719 6zkr:9 (3.5) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4720 6zkr:9 (3.5) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4721 6zks:1 (3.1) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4722 6zks:3 (3.1) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4723 6zks:3 (3.1) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4724 6zks:4 (3.1) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4725 6zks:6 (3.1) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4726 6zks:9 (3.1) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4727 6zks:9 (3.1) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4728 6zkt:1 (2.8) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4729 6zkt:3 (2.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4730 6zkt:3 (2.8) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4731 6zkt:4 (2.8) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4732 6zkt:6 (2.8) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4733 6zkt:9 (2.8) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4734 6zkt:9 (2.8) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4735 6zku:1 (3.0) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4736 6zku:3 (3.0) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4737 6zku:3 (3.0) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4738 6zku:4 (3.0) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4739 6zku:6 (3.0) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4740 6zku:9 (3.0) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4741 6zku:9 (3.0) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4742 6zkv:1 (2.9) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 32972993
    4743 6zkv:3 (2.9) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4744 6zkv:3 (2.9) BS02 SF4 N/A GO:0008137 ... N/A 32972993
    4745 6zkv:4 (2.9) BS01 SF4 N/A GO:0016651 ... N/A 32972993
    4746 6zkv:6 (2.9) BS01 SF4 N/A GO:0008137 ... N/A 32972993
    4747 6zkv:9 (2.9) BS01 SF4 N/A GO:0016020 ... N/A 32972993
    4748 6zkv:9 (2.9) BS02 SF4 N/A GO:0016020 ... N/A 32972993
    4749 6zme:CI (3.0) BS03 SF4 3.6.5.- GO:0000054 ... P61221 32680882
    4750 6zme:CI (3.0) BS04 SF4 3.6.5.- GO:0000054 ... P61221 32680882
    4751 6zoo:A (2.74) BS43 SF4 1.97.1.12 GO:0000287 ... A0A0F6NFW5 34085703
    4752 6zoo:B (2.74) BS05 SF4 1.97.1.12 GO:0000287 ... A0A0F6NGI2 34085703
    4753 6zoo:C (2.74) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 34085703
    4754 6zoo:C (2.74) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 34085703
    4755 6zr2:B (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 33067417
    4756 6zr2:D (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 33067417
    4757 6zr2:F (3.1) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 33067417
    4758 6zr2:G (3.1) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    4759 6zr2:G (3.1) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    4760 6zr2:I (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 33067417
    4761 6zr2:I (3.1) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 33067417
    4762 6ztq:B (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 33067417
    4763 6ztq:D (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 33067417
    4764 6ztq:F (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 33067417
    4765 6ztq:G (3.0) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    4766 6ztq:G (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 33067417
    4767 6ztq:I (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 33067417
    4768 6ztq:I (3.0) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 33067417
    4769 6zu9:k (6.2) BS04 SF4 ? GO:0000054 ... Q03195 33289941
    4770 6zu9:k (6.2) BS05 SF4 ? GO:0000054 ... Q03195 33289941
    4771 6zvj:1 (3.8) BS02 SF4 3.6.5.- GO:0000054 ... P61221 33289941
    4772 6zvj:1 (3.8) BS03 SF4 3.6.5.- GO:0000054 ... P61221 33289941
    4773 6zw9:A (1.759) BS01 SF4 ? GO:0046872 ... A0A2H4Z949 32929873
    4774 6zw9:B (1.759) BS01 SF4 ? GO:0046872 ... A0A2H4Z949 32929873
    4775 6zxs:A (3.0) BS42 SF4 1.97.1.12 GO:0000287 ... A0A0F6NFW5 N/A
    4776 6zxs:B (3.0) BS04 SF4 1.97.1.12 GO:0000287 ... A0A0F6NGI2 N/A
    4777 6zxs:C (3.0) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 N/A
    4778 6zxs:C (3.0) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 N/A
    4779 6zxu:A (1.73) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4780 6zxu:A (1.73) BS02 SF4 ? GO:0046872 ... K2MB66 32887524
    4781 6zxu:B (1.73) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4782 6zxu:B (1.73) BS02 SF4 ? GO:0046872 ... K2MB66 32887524
    4783 6zxu:C (1.73) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4784 6zxu:C (1.73) BS02 SF4 ? GO:0046872 ... K2MB66 32887524
    4785 6zxx:A (1.99) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4786 6zxx:A (1.99) BS02 SF4 ? GO:0046872 ... K2MB66 32887524
    4787 6zxx:B (1.99) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4788 6zxx:B (1.99) BS02 SF4 ? GO:0046872 ... K2MB66 32887524
    4789 6zxx:C (1.99) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4790 6zxx:C (1.99) BS02 SF4 ? GO:0046872 ... K2MB66 32887524
    4791 6zy0:A (2.13) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4792 6zy0:A (2.13) BS02 SF4 ? GO:0046872 ... K2MB66 32887524
    4793 6zy0:B (2.13) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4794 6zy0:B (2.13) BS02 SF4 ? GO:0046872 ... K2MB66 32887524
    4795 6zy0:C (2.13) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4796 6zy0:C (2.13) BS02 SF4 ? GO:0046872 ... K2MB66 32887524
    4797 6zy1:A (1.99) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4798 6zy1:A (1.99) BS02 SF4 ? GO:0046872 ... K2MB66 32887524
    4799 6zy1:B (1.99) BS01 SF4 ? GO:0046872 ... K2MB66 32887524
    4800 6zy1:B (1.99) BS02 SF4 ? GO:0046872 ... K2MB66 32887524

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218