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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 6nwa:b (3.48) BS06 SF4 1.97.1.12 GO:0000287 ... P29255 31133699
    3802 6nwa:c (3.48) BS01 SF4 1.97.1.12 GO:0009055 ... P32422 31133699
    3803 6nwa:c (3.48) BS02 SF4 1.97.1.12 GO:0009055 ... P32422 31133699
    3804 6nwy:QD (3.5) BS02 SF4 ? GO:0003723 ... P80373 33016876
    3805 6nwy:XD (3.5) BS02 SF4 ? GO:0003723 ... P80373 33016876
    3806 6ny6:D (3.74) BS02 SF4 ? GO:0003723 ... P80373 31501867
    3807 6nzj:A (2.4) BS01 SF4 1.18.6.1 GO:0005524 ... Q8TJ93 31289188
    3808 6nzj:B (2.4) BS01 SF4 1.18.6.1 GO:0005524 ... Q8TJ93 31289188
    3809 6o0b:A (1.6) BS01 SF4 1.18.6.1 GO:0005524 ... C1DGZ6 31402524
    3810 6o0b:B (1.6) BS01 SF4 1.18.6.1 GO:0005524 ... C1DGZ6 31402524
    3811 6o3m:QD (3.97) BS02 SF4 ? GO:0003723 ... P80373 33016876
    3812 6o3m:XD (3.97) BS02 SF4 ? GO:0003723 ... P80373 33016876
    3813 6o97:1d (2.75) BS02 SF4 ? GO:0003723 ... P80373 30793894
    3814 6o97:2d (2.75) BS03 SF4 ? GO:0003723 ... P80373 30793894
    3815 6o9l:0 (7.2) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 31110295
    3816 6o9m:0 (4.4) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 31110295
    3817 6of1:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 30936109
    3818 6of1:2d (2.8) BS03 SF4 ? GO:0003723 ... P80373 30936109
    3819 6of6:QD (3.2) BS02 SF4 ? GO:0003723 ... P80373 32601241
    3820 6of6:XD (3.2) BS02 SF4 ? GO:0003723 ... P80373 32601241
    3821 6oj2:QD (3.2) BS02 SF4 ? GO:0003723 ... P80373 32601241
    3822 6oj2:XD (3.2) BS02 SF4 ? GO:0003723 ... P80373 32601241
    3823 6onc:A (1.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 31296570
    3824 6onc:B (1.5) BS02 SF4 1.2.7.4 GO:0003824 ... Q72A99 31296570
    3825 6onc:C (1.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 31296570
    3826 6onc:D (1.5) BS02 SF4 1.2.7.4 GO:0003824 ... Q72A99 31296570
    3827 6ond:A (1.723) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 31296570
    3828 6ond:B (1.723) BS02 SF4 1.2.7.4 GO:0003824 ... Q72A99 31296570
    3829 6ond:C (1.723) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 31296570
    3830 6ond:D (1.723) BS02 SF4 1.2.7.4 GO:0003824 ... Q72A99 31296570
    3831 6ono:A (1.85) BS01 SF4 ? GO:0003677 ... P9WF43 31807774
    3832 6ono:B (1.85) BS01 SF4 ? GO:0003700 ... P9WGI1 31807774
    3833 6ono:C (1.85) BS01 SF4 ? GO:0003677 ... P9WF43 31807774
    3834 6ono:D (1.85) BS01 SF4 ? GO:0003700 ... P9WGI1 31807774
    3835 6ons:A (2.485) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 31296570
    3836 6onu:A (1.85) BS01 SF4 ? GO:0003677 ... P9WF43 31807774
    3837 6onu:B (1.85) BS01 SF4 ? GO:0003700 ... P9WGI1 31807774
    3838 6onu:C (1.85) BS01 SF4 ? GO:0003677 ... P9WF43 31807774
    3839 6onu:D (1.85) BS01 SF4 ? GO:0003700 ... P9WGI1 31807774
    3840 6onu:E (1.85) BS01 SF4 ? GO:0003677 ... P9WF43 31807774
    3841 6onu:F (1.85) BS01 SF4 ? GO:0003700 ... P9WGI1 31807774
    3842 6onu:G (1.85) BS01 SF4 ? GO:0003677 ... P9WF43 31807774
    3843 6onu:H (1.85) BS01 SF4 ? GO:0003700 ... P9WGI1 31807774
    3844 6ope:QD (3.1) BS02 SF4 ? GO:0003723 ... P80373 32601241
    3845 6ope:XD (3.1) BS02 SF4 ? GO:0003723 ... P80373 32601241
    3846 6or8:A (1.65) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 31390192
    3847 6ora:A (2.2) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 31390192
    3848 6ora:B (2.2) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 31390192
    3849 6ord:QD (3.1) BS02 SF4 ? GO:0003723 ... P80373 32601241
    3850 6ord:XD (3.1) BS02 SF4 ? GO:0003723 ... P80373 32601241
    3851 6osi:QD (4.14) BS02 SF4 ? GO:0003723 ... P80373 33016876
    3852 6osi:XD (4.14) BS02 SF4 ? GO:0003723 ... P80373 33016876
    3853 6otr:QD (3.12) BS02 SF4 ? GO:0003723 ... P80373 31501867
    3854 6otr:XD (3.12) BS02 SF4 ? GO:0003723 ... P80373 31501867
    3855 6oxa:QD (3.25) BS02 SF4 ? GO:0003723 ... P80373 31501867
    3856 6oxa:XD (3.25) BS02 SF4 ? GO:0003723 ... P80373 31501867
    3857 6oxi:QD (3.495) BS02 SF4 ? GO:0003723 ... P80373 31501867
    3858 6oxi:XD (3.495) BS02 SF4 ? GO:0003723 ... P80373 31501867
    3859 6p1h:A (3.2) BS03 SF4 2.7.7.7
    3.1.11.-
    GO:0000166 ... P15436 31582849
    3860 6p78:A (1.726) BS01 SF4 ? GO:0003824 ... B1C2R2 31481610
    3861 6pfy:A (2.9) BS44 SF4 1.97.1.12 GO:0000287 ... P0A405 31685819
    3862 6pfy:B (2.9) BS07 SF4 1.97.1.12 GO:0000287 ... P0A407 31685819
    3863 6pfy:C (2.9) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3864 6pfy:C (2.9) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3865 6pfy:G (2.9) BS44 SF4 1.97.1.12 GO:0000287 ... P0A405 31685819
    3866 6pfy:H (2.9) BS05 SF4 1.97.1.12 GO:0000287 ... P0A407 31685819
    3867 6pfy:N (2.9) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3868 6pfy:N (2.9) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3869 6pfy:Y (2.9) BS45 SF4 1.97.1.12 GO:0000287 ... P0A405 31685819
    3870 6pfy:Z (2.9) BS07 SF4 1.97.1.12 GO:0000287 ... P0A407 31685819
    3871 6pfy:a (2.9) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3872 6pfy:a (2.9) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3873 6pgk:A (2.9) BS44 SF4 1.97.1.12 GO:0000287 ... P0A405 31685819
    3874 6pgk:B (2.9) BS06 SF4 1.97.1.12 GO:0000287 ... P0A407 31685819
    3875 6pgk:C (2.9) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3876 6pgk:C (2.9) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3877 6pgk:G (2.9) BS45 SF4 1.97.1.12 GO:0000287 ... P0A405 31685819
    3878 6pgk:H (2.9) BS06 SF4 1.97.1.12 GO:0000287 ... P0A407 31685819
    3879 6pgk:N (2.9) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3880 6pgk:N (2.9) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3881 6pgk:Y (2.9) BS45 SF4 1.97.1.12 GO:0000287 ... P0A405 31685819
    3882 6pgk:Z (2.9) BS06 SF4 1.97.1.12 GO:0000287 ... P0A407 31685819
    3883 6pgk:a (2.9) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3884 6pgk:a (2.9) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 31685819
    3885 6pnj:A (3.19) BS44 SF4 1.97.1.12 GO:0000287 ... G6FME9 N/A
    3886 6pnj:B (3.19) BS08 SF4 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    3887 6pnj:C (3.19) BS01 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    3888 6pnj:C (3.19) BS02 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    3889 6pnj:G (3.19) BS44 SF4 1.97.1.12 GO:0000287 ... G6FME9 N/A
    3890 6pnj:H (3.19) BS08 SF4 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    3891 6pnj:N (3.19) BS01 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    3892 6pnj:N (3.19) BS02 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    3893 6pnj:a (3.19) BS44 SF4 1.97.1.12 GO:0000287 ... G6FME9 N/A
    3894 6pnj:b (3.19) BS08 SF4 1.97.1.12 GO:0000287 ... G6FMF0 N/A
    3895 6pnj:c (3.19) BS01 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    3896 6pnj:c (3.19) BS02 SF4 1.97.1.12 GO:0009055 ... G6FW50 N/A
    3897 6ppj:A (3.5) BS01 SF4 5.6.2.4 GO:0000725 ... A0QTR9 31740608
    3898 6ppr:A (3.5) BS03 SF4 5.6.2.4 GO:0000725 ... A0QTR9 31740608
    3899 6ppu:A (3.5) BS03 SF4 5.6.2.4 GO:0003677 ... A0QTR9 31740608
    3900 6q0c:A (2.0) BS03 SF4 3.2.2.31 GO:0000701 ... P83847 31829624
    3901 6q2d:A (3.45) BS01 SF4 2.5.1.108 GO:0016740 ... A5UMY5 31566354
    3902 6q2d:B (3.45) BS01 SF4 2.5.1.108 GO:0016740 ... A5UMY5 31566354
    3903 6q2e:A (1.768) BS02 SF4 2.5.1.108 GO:0016740 ... A5UMY5 31566354
    3904 6q2e:B (1.768) BS02 SF4 2.5.1.108 GO:0016740 ... A5UMY5 31566354
    3905 6q2p:A (1.452) BS01 SF4 4.2.-.- GO:0003824 ... Q8CBB9 31917549
    3906 6q2p:B (1.452) BS01 SF4 4.2.-.- GO:0003824 ... Q8CBB9 31917549
    3907 6q2q:A (1.892) BS01 SF4 4.2.-.- GO:0003824 ... Q8CBB9 31917549
    3908 6q2q:B (1.892) BS01 SF4 4.2.-.- GO:0003824 ... Q8CBB9 31917549
    3909 6q8o:1 (3.605) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 32811817
    3910 6q8o:3 (3.605) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3911 6q8o:3 (3.605) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3912 6q8o:3 (3.605) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3913 6q8o:6 (3.605) BS02 SF4 7.1.1.- GO:0005506 ... Q56218 32811817
    3914 6q8o:9 (3.605) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3915 6q8o:9 (3.605) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3916 6q8o:B (3.605) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 32811817
    3917 6q8o:D (3.605) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3918 6q8o:D (3.605) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3919 6q8o:D (3.605) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3920 6q8o:G (3.605) BS02 SF4 7.1.1.- GO:0005506 ... Q56218 32811817
    3921 6q8o:O (3.605) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3922 6q8o:O (3.605) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3923 6q8w:1 (3.4) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 32811817
    3924 6q8w:3 (3.4) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3925 6q8w:3 (3.4) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3926 6q8w:3 (3.4) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3927 6q8w:6 (3.4) BS02 SF4 7.1.1.- GO:0005506 ... Q56218 32811817
    3928 6q8w:9 (3.4) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3929 6q8w:9 (3.4) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3930 6q8w:B (3.4) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 32811817
    3931 6q8w:D (3.4) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3932 6q8w:D (3.4) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3933 6q8w:D (3.4) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3934 6q8w:G (3.4) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 32811817
    3935 6q8w:O (3.4) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3936 6q8w:O (3.4) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3937 6q8x:1 (3.508) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 32811817
    3938 6q8x:3 (3.508) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3939 6q8x:3 (3.508) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3940 6q8x:3 (3.508) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3941 6q8x:6 (3.508) BS02 SF4 7.1.1.- GO:0005506 ... Q56218 32811817
    3942 6q8x:9 (3.508) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3943 6q8x:9 (3.508) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3944 6q8x:B (3.508) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 32811817
    3945 6q8x:D (3.508) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3946 6q8x:D (3.508) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3947 6q8x:D (3.508) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 32811817
    3948 6q8x:E (3.508) BS02 SF4 7.1.1.- GO:0005886 ... Q56220 32811817
    3949 6q8x:G (3.508) BS02 SF4 7.1.1.- GO:0005506 ... Q56218 32811817
    3950 6q8x:O (3.508) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3951 6q8x:O (3.508) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 32811817
    3952 6q93:A (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    3953 6q93:B (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    3954 6q93:C (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    3955 6q93:D (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    3956 6q93:E (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    3957 6q93:F (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    3958 6q93:G (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    3959 6q93:H (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    3960 6q9c:B (1.78) BS01 SF4 7.1.1.- GO:0008137 ... O66841 31186428
    3961 6q9c:D (1.78) BS01 SF4 7.1.1.- GO:0008137 ... O66841 31186428
    3962 6q9d:S1 (3.8) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    3963 6q9d:S1 (3.8) BS02 SF4 N/A GO:0008137 ... N/A 31492636
    3964 6q9d:S7 (3.8) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    3965 6q9d:S8 (3.8) BS01 SF4 N/A GO:0016020 ... N/A 31492636
    3966 6q9d:S8 (3.8) BS02 SF4 N/A GO:0016020 ... N/A 31492636
    3967 6q9d:V1 (3.8) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 31492636
    3968 6q9g:B (2.1) BS01 SF4 7.1.1.- GO:0008137 ... O66841 31186428
    3969 6q9g:D (2.1) BS01 SF4 7.1.1.- GO:0008137 ... O66841 31186428
    3970 6q9j:B (1.83) BS01 SF4 7.1.1.- GO:0008137 ... O66841 31186428
    3971 6q9j:D (1.83) BS01 SF4 7.1.1.- GO:0008137 ... O66841 31186428
    3972 6q9k:B (1.99) BS01 SF4 7.1.1.- GO:0008137 ... O66841 31186428
    3973 6q9k:D (1.99) BS01 SF4 7.1.1.- GO:0008137 ... O66841 31186428
    3974 6qa9:S1 (4.1) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    3975 6qa9:S1 (4.1) BS02 SF4 N/A GO:0008137 ... N/A 31492636
    3976 6qa9:S2 (4.1) BS01 SF4 N/A GO:0016651 ... N/A 31492636
    3977 6qa9:S7 (4.1) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    3978 6qa9:S8 (4.1) BS01 SF4 N/A GO:0016020 ... N/A 31492636
    3979 6qa9:S8 (4.1) BS02 SF4 N/A GO:0016020 ... N/A 31492636
    3980 6qa9:V1 (4.1) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 31492636
    3981 6qbx:S1 (4.2) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    3982 6qbx:S1 (4.2) BS02 SF4 N/A GO:0008137 ... N/A 31492636
    3983 6qbx:S7 (4.2) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    3984 6qbx:S8 (4.2) BS01 SF4 N/A GO:0016020 ... N/A 31492636
    3985 6qbx:S8 (4.2) BS02 SF4 N/A GO:0016020 ... N/A 31492636
    3986 6qbx:V1 (4.2) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 31492636
    3987 6qc2:S1 (4.2) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    3988 6qc2:S1 (4.2) BS02 SF4 N/A GO:0008137 ... N/A 31492636
    3989 6qc2:S7 (4.2) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    3990 6qc2:S8 (4.2) BS01 SF4 N/A GO:0016020 ... N/A 31492636
    3991 6qc2:S8 (4.2) BS02 SF4 N/A GO:0016020 ... N/A 31492636
    3992 6qc2:V1 (4.2) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 31492636
    3993 6qc3:S1 (4.2) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    3994 6qc3:S1 (4.2) BS02 SF4 N/A GO:0008137 ... N/A 31492636
    3995 6qc3:S7 (4.2) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    3996 6qc3:S8 (4.2) BS01 SF4 N/A GO:0016020 ... N/A 31492636
    3997 6qc3:S8 (4.2) BS02 SF4 N/A GO:0016020 ... N/A 31492636
    3998 6qc3:V1 (4.2) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 31492636
    3999 6qc4:S1 (4.6) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    4000 6qc4:S1 (4.6) BS02 SF4 N/A GO:0008137 ... N/A 31492636

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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