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BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 6cio:A (3.003) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3202 6cio:A (3.003) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3203 6cio:B (3.003) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3204 6cio:B (3.003) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3205 6cio:B (3.003) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3206 6cio:C (3.003) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3207 6cio:C (3.003) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3208 6cio:C (3.003) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3209 6cio:D (3.003) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3210 6cio:D (3.003) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3211 6cio:D (3.003) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3212 6cio:E (3.003) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3213 6cio:E (3.003) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3214 6cio:E (3.003) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3215 6cio:F (3.003) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3216 6cio:F (3.003) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3217 6cio:F (3.003) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3218 6cip:A (3.189) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3219 6cip:A (3.189) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3220 6cip:A (3.189) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3221 6cip:B (3.189) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3222 6cip:B (3.189) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3223 6cip:B (3.189) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3224 6cip:C (3.189) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3225 6cip:C (3.189) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3226 6cip:C (3.189) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3227 6cip:D (3.189) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3228 6cip:D (3.189) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3229 6cip:D (3.189) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3230 6cip:E (3.189) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3231 6cip:E (3.189) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3232 6cip:E (3.189) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3233 6cip:F (3.189) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3234 6cip:F (3.189) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3235 6cip:F (3.189) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3236 6ciq:A (3.302) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3237 6ciq:A (3.302) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3238 6ciq:A (3.302) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3239 6ciq:B (3.302) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3240 6ciq:B (3.302) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3241 6ciq:B (3.302) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3242 6ciq:C (3.302) BS01 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3243 6ciq:C (3.302) BS02 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3244 6ciq:C (3.302) BS03 SF4 1.2.7.1 GO:0003824 ... Q2RMD6 29581263
    3245 6cyj:A (2.699) BS01 SF4 ? GO:0006355 ... O06581 31504787
    3246 6cyj:B (2.699) BS02 SF4 ? GO:0006355 ... O06581 31504787
    3247 6cyy:A (2.506) BS02 SF4 ? GO:0006355 ... O06581 31504787
    3248 6cyy:B (2.506) BS02 SF4 ? GO:0006355 ... O06581 31504787
    3249 6cz6:A (2.7) BS02 SF4 ? GO:0006355 ... O06581 31504787
    3250 6cz6:B (2.7) BS02 SF4 ? GO:0006355 ... O06581 31504787
    3251 6cz6:C (2.7) BS02 SF4 ? GO:0006355 ... O06581 31504787
    3252 6cz6:D (2.7) BS02 SF4 ? GO:0006355 ... O06581 31504787
    3253 6cz7:A (1.62) BS01 SF4 1.20.99.1 GO:0016491 ... Q7WTU0 30104376
    3254 6cz7:B (1.62) BS01 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3255 6cz7:B (1.62) BS02 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3256 6cz7:B (1.62) BS03 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3257 6cz7:B (1.62) BS04 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3258 6cz7:C (1.62) BS01 SF4 1.20.99.1 GO:0016491 ... Q7WTU0 30104376
    3259 6cz7:D (1.62) BS01 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3260 6cz7:D (1.62) BS02 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3261 6cz7:D (1.62) BS03 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3262 6cz7:D (1.62) BS04 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3263 6cz8:A (1.78) BS01 SF4 1.20.99.1 GO:0016491 ... Q7WTU0 30104376
    3264 6cz8:B (1.78) BS01 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3265 6cz8:B (1.78) BS02 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3266 6cz8:B (1.78) BS03 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3267 6cz8:B (1.78) BS04 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3268 6cz8:C (1.78) BS01 SF4 1.20.99.1 GO:0016491 ... Q7WTU0 30104376
    3269 6cz8:D (1.78) BS01 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3270 6cz8:D (1.78) BS02 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3271 6cz8:D (1.78) BS03 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3272 6cz8:D (1.78) BS04 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3273 6cz9:A (1.8) BS01 SF4 1.20.99.1 GO:0016491 ... Q7WTU0 30104376
    3274 6cz9:B (1.8) BS01 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3275 6cz9:B (1.8) BS02 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3276 6cz9:B (1.8) BS03 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3277 6cz9:B (1.8) BS04 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3278 6cz9:C (1.8) BS01 SF4 1.20.99.1 GO:0016491 ... Q7WTU0 30104376
    3279 6cz9:D (1.8) BS01 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3280 6cz9:D (1.8) BS02 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3281 6cz9:D (1.8) BS03 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3282 6cz9:D (1.8) BS04 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3283 6cza:A (1.71) BS01 SF4 1.20.99.1 GO:0016491 ... Q7WTU0 30104376
    3284 6cza:B (1.71) BS01 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3285 6cza:B (1.71) BS02 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3286 6cza:B (1.71) BS03 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3287 6cza:B (1.71) BS04 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3288 6cza:C (1.71) BS01 SF4 1.20.99.1 GO:0016491 ... Q7WTU0 30104376
    3289 6cza:D (1.71) BS01 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3290 6cza:D (1.71) BS02 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3291 6cza:D (1.71) BS03 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3292 6cza:D (1.71) BS04 SF4 ? GO:0042597 ... Q7WTT9 30104376
    3293 6czr:1d (3.14) BS02 SF4 ? GO:0003723 ... P80373 N/A
    3294 6czr:2d (3.14) BS02 SF4 ? GO:0003723 ... P80373 N/A
    3295 6dc2:A (1.992) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3296 6dc2:B (1.992) BS02 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3297 6dc2:C (1.992) BS01 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3298 6dc2:D (1.992) BS02 SF4 1.2.7.4 GO:0003824 ... Q72A99 30277213
    3299 6dd6:A (2.3) BS03 SF4 4.1.99.13 GO:0000166 ... A9CH39 29952383
    3300 6de6:A (2.1) BS03 SF4 ? GO:0000166 ... Q60I59 37146865
    3301 6de6:B (2.1) BS03 SF4 ? GO:0000166 ... Q60I59 37146865
    3302 6dhw:A (2.013) BS01 SF4 2.7.7.- GO:0006269 ... P49643 30562384
    3303 6dhw:B (2.013) BS01 SF4 2.7.7.- GO:0006269 ... P49643 30562384
    3304 6di2:A (1.32) BS01 SF4 2.7.7.- GO:0006269 ... C7GP29 30541886
    3305 6di6:A (1.39) BS01 SF4 2.7.7.- GO:0006269 ... C7GP29 30541886
    3306 6djt:A (1.64) BS01 SF4 4.1.3.44 GO:0003824 ... Q57705 29792696
    3307 6dtv:A (1.12) BS01 SF4 2.7.7.- GO:0006269 ... P20457 30541886
    3308 6dtz:A (1.36) BS01 SF4 2.7.7.- GO:0006269 ... P20457 30541886
    3309 6du0:A (1.82) BS01 SF4 2.7.7.- GO:0006269 ... P20457 30541886
    3310 6efn:A (1.291) BS02 SF4 1.21.98.- GO:0003824 ... O31423 N/A
    3311 6ehq:L (2.2) BS02 SF4 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    3312 6ehq:S (2.2) BS01 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    3313 6ehq:S (2.2) BS03 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    3314 6ehq:T (2.2) BS01 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    3315 6ehq:T (2.2) BS03 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    3316 6ehs:L (1.5) BS02 SF4 1.12.99.6 GO:0005886 ... P0ACE1 29555844
    3317 6ehs:M (1.5) BS02 SF4 1.12.99.6 GO:0005886 ... P0ACE1 29555844
    3318 6ehs:S (1.5) BS01 SF4 1.12.99.6 GO:0008901 ... B7LGE4 29555844
    3319 6ehs:S (1.5) BS03 SF4 1.12.99.6 GO:0008901 ... B7LGE4 29555844
    3320 6ehs:T (1.5) BS01 SF4 1.12.99.6 GO:0008901 ... B7LGE4 29555844
    3321 6ehs:T (1.5) BS03 SF4 1.12.99.6 GO:0008901 ... B7LGE4 29555844
    3322 6elq:A (2.52) BS01 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    3323 6elq:A (2.52) BS02 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    3324 6elq:B (2.52) BS01 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    3325 6elq:B (2.52) BS02 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    3326 6elq:X (2.52) BS01 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    3327 6elq:X (2.52) BS03 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    3328 6en9:L (1.5) BS02 SF4 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    3329 6en9:M (1.5) BS02 SF4 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    3330 6en9:S (1.5) BS01 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    3331 6en9:S (1.5) BS03 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    3332 6en9:T (1.5) BS01 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    3333 6en9:T (1.5) BS03 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    3334 6f0k:B (3.87) BS04 SF4 ? N/A D0MDD5 29712914
    3335 6f0k:B (3.87) BS05 SF4 ? N/A D0MDD5 29712914
    3336 6f0k:B (3.87) BS06 SF4 ? N/A D0MDD5 29712914
    3337 6f48:A (1.5) BS01 SF4 2.5.1.72 GO:0005737 ... Q9X1X7 29641168
    3338 6f4d:A (2.0) BS01 SF4 2.5.1.72 GO:0005737 ... Q9X1X7 29641168
    3339 6f4l:A (2.3) BS01 SF4 2.5.1.72 GO:0005737 ... Q9X1X7 29641168
    3340 6fah:A (3.133) BS02 SF4 1.3.1.108 GO:0005737 ... H6LGM8 29325219
    3341 6fah:A (3.133) BS03 SF4 1.3.1.108 GO:0005737 ... H6LGM8 29325219
    3342 6fah:E (3.133) BS02 SF4 1.3.1.108 GO:0005737 ... H6LGM8 29325219
    3343 6fah:E (3.133) BS03 SF4 1.3.1.108 GO:0005737 ... H6LGM8 29325219
    3344 6fd1:A (1.35) BS01 SF4 ? GO:0003677 ... P00214 9600844
    3345 6fd2:A (2.55) BS02 SF4 ? GO:0003824 ... Q2MFI7 29300094
    3346 6fd2:B (2.55) BS02 SF4 ? GO:0003824 ... Q2MFI7 29300094
    3347 6fdr:A (1.4) BS01 SF4 ? GO:0003677 ... P00214 10387068
    3348 6fkr:1d (3.2) BS02 SF4 ? GO:0003723 ... P80373 29526712
    3349 6fkr:2d (3.2) BS02 SF4 ? GO:0003723 ... P80373 29526712
    3350 6fos:A (4.0) BS43 SF4 1.97.1.12 GO:0000287 ... Q85FY7 29582227
    3351 6fos:B (4.0) BS03 SF4 1.97.1.12 GO:0000287 ... Q85FY6 29582227
    3352 6fos:C (4.0) BS01 SF4 1.97.1.12 GO:0009055 ... Q85G47 29582227
    3353 6fos:C (4.0) BS02 SF4 1.97.1.12 GO:0009055 ... Q85G47 29582227
    3354 6fpi:S (1.5) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 30070475
    3355 6fpi:T (1.5) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 30070475
    3356 6fpo:S (1.05) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 30070475
    3357 6fpo:T (1.05) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 30070475
    3358 6fpw:S (1.35) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 30070475
    3359 6fpw:T (1.35) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 30070475
    3360 6fwr:A (2.5) BS02 SF4 3.6.4.12 GO:0003676 ... P27296 30520735
    3361 6fws:A (2.5) BS02 SF4 3.6.4.12 GO:0003676 ... P27296 30520735
    3362 6fws:B (2.5) BS02 SF4 3.6.4.12 GO:0003676 ... P27296 30520735
    3363 6fz6:A (1.42) BS01 SF4 2.1.1.192 GO:0000049 ... D1C4T7 N/A
    3364 6fz6:B (1.42) BS01 SF4 2.1.1.192 GO:0000049 ... D1C4T7 N/A
    3365 6g2g:A (2.57) BS01 SF4 ? GO:0005524 ... G0SH86 30201724
    3366 6g2g:B (2.57) BS01 SF4 ? GO:0005524 ... G0SH86 30201724
    3367 6g2j:B (3.3) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 29915388
    3368 6g2j:D (3.3) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 29915388
    3369 6g2j:F (3.3) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 29915388
    3370 6g2j:G (3.3) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 29915388
    3371 6g2j:G (3.3) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 29915388
    3372 6g2j:I (3.3) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 29915388
    3373 6g2j:I (3.3) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 29915388
    3374 6g72:B (3.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 29915388
    3375 6g72:D (3.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 29915388
    3376 6g72:F (3.9) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 29915388
    3377 6g72:G (3.9) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 29915388
    3378 6g72:G (3.9) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 29915388
    3379 6g72:I (3.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 29915388
    3380 6g72:I (3.9) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 29915388
    3381 6g74:A (2.0) BS01 SF4 2.5.1.72 GO:0005737 ... Q9X1X7 29641168
    3382 6g74:B (2.0) BS01 SF4 2.5.1.72 GO:0005737 ... Q9X1X7 29641168
    3383 6g7m:S (1.71) BS01 SF4 1.12.99.6 GO:0008901 ... P69741 N/A
    3384 6g7m:S (1.71) BS03 SF4 1.12.99.6 GO:0008901 ... P69741 N/A
    3385 6g7m:T (1.71) BS01 SF4 1.12.99.6 GO:0008901 ... P69741 N/A
    3386 6g7m:T (1.71) BS03 SF4 1.12.99.6 GO:0008901 ... P69741 N/A
    3387 6g7r:S (1.2) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 30070475
    3388 6g7r:T (1.2) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 30070475
    3389 6g94:Q (2.5) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 29888350
    3390 6g94:R (2.5) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 29888350
    3391 6g94:S (2.5) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 29888350
    3392 6g94:T (2.5) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 29888350
    3393 6gal:S (1.25) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 30070475
    3394 6gal:T (1.25) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 30070475
    3395 6gam:L (1.4) BS02 SF4 1.12.99.6 GO:0005515 ... P0ACE0 30070475
    3396 6gam:M (1.4) BS02 SF4 1.12.99.6 GO:0005515 ... P0ACE0 30070475
    3397 6gam:S (1.4) BS01 SF4 1.12.99.6 GO:0008901 ... P69741 30070475
    3398 6gam:S (1.4) BS03 SF4 1.12.99.6 GO:0008901 ... P69741 30070475
    3399 6gam:T (1.4) BS01 SF4 1.12.99.6 GO:0008901 ... P69741 30070475
    3400 6gam:T (1.4) BS03 SF4 1.12.99.6 GO:0008901 ... P69741 30070475

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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