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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 5oef:A (2.05) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 29177350
    2802 5oef:B (2.05) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29177350
    2803 5oef:B (2.05) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29177350
    2804 5oef:B (2.05) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29177350
    2805 5oef:B (2.05) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 29177350
    2806 5of4:B (4.4) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 28902838
    2807 5oqj:0 (4.7) BS01 SF4 3.6.4.12 GO:0000019 ... P06839 29088706
    2808 5oqm:0 (5.8) BS01 SF4 3.6.4.12 GO:0000019 ... P06839 29088706
    2809 5oy0:1 (2.501) BS42 SF4 1.97.1.12 GO:0000287 ... P29254 29414678
    2810 5oy0:2 (2.501) BS04 SF4 1.97.1.12 GO:0000287 ... P29255 29414678
    2811 5oy0:3 (2.501) BS01 SF4 1.97.1.12 GO:0009055 ... P32422 29414678
    2812 5oy0:3 (2.501) BS02 SF4 1.97.1.12 GO:0009055 ... P32422 29414678
    2813 5oy0:A (2.501) BS42 SF4 1.97.1.12 GO:0000287 ... P29254 29414678
    2814 5oy0:B (2.501) BS05 SF4 1.97.1.12 GO:0000287 ... P29255 29414678
    2815 5oy0:C (2.501) BS01 SF4 1.97.1.12 GO:0009055 ... P32422 29414678
    2816 5oy0:C (2.501) BS02 SF4 1.97.1.12 GO:0009055 ... P32422 29414678
    2817 5oy0:a (2.501) BS41 SF4 1.97.1.12 GO:0000287 ... P29254 29414678
    2818 5oy0:b (2.501) BS05 SF4 1.97.1.12 GO:0000287 ... P29255 29414678
    2819 5oy0:c (2.501) BS01 SF4 1.97.1.12 GO:0009055 ... P32422 29414678
    2820 5oy0:c (2.501) BS02 SF4 1.97.1.12 GO:0009055 ... P32422 29414678
    2821 5t5i:B (1.9) BS01 SF4 ? GO:0015948 ... T2GJQ6 27846502
    2822 5t5i:F (1.9) BS01 SF4 ? GO:0016491 ... O74028 27846502
    2823 5t5i:F (1.9) BS02 SF4 ? GO:0016491 ... O74028 27846502
    2824 5t5i:F (1.9) BS03 SF4 ? GO:0016491 ... O74028 27846502
    2825 5t5i:F (1.9) BS04 SF4 ? GO:0016491 ... O74028 27846502
    2826 5t5i:F (1.9) BS05 SF4 ? GO:0016491 ... O74028 27846502
    2827 5t5i:F (1.9) BS06 SF4 ? GO:0016491 ... O74028 27846502
    2828 5t5i:F (1.9) BS07 SF4 ? GO:0016491 ... O74028 27846502
    2829 5t5i:F (1.9) BS08 SF4 ? GO:0016491 ... O74028 27846502
    2830 5t5i:G (1.9) BS01 SF4 ? GO:0016491 ... Q1MVD4 27846502
    2831 5t5i:G (1.9) BS02 SF4 ? GO:0016491 ... Q1MVD4 27846502
    2832 5t5i:J (1.9) BS01 SF4 ? GO:0015948 ... T2GJQ6 27846502
    2833 5t5i:N (1.9) BS01 SF4 ? GO:0016491 ... O74028 27846502
    2834 5t5i:N (1.9) BS02 SF4 ? GO:0016491 ... O74028 27846502
    2835 5t5i:N (1.9) BS03 SF4 ? GO:0016491 ... O74028 27846502
    2836 5t5i:N (1.9) BS04 SF4 ? GO:0016491 ... O74028 27846502
    2837 5t5i:N (1.9) BS05 SF4 ? GO:0016491 ... O74028 27846502
    2838 5t5i:N (1.9) BS06 SF4 ? GO:0016491 ... O74028 27846502
    2839 5t5i:N (1.9) BS07 SF4 ? GO:0016491 ... O74028 27846502
    2840 5t5i:N (1.9) BS08 SF4 ? GO:0016491 ... O74028 27846502
    2841 5t5i:P (1.9) BS01 SF4 ? GO:0016491 ... Q1MVD4 27846502
    2842 5t5i:P (1.9) BS02 SF4 ? GO:0016491 ... Q1MVD4 27846502
    2843 5t5m:B (2.5) BS01 SF4 1.2.99.5 GO:0015948 ... O74032 27846502
    2844 5t5m:F (2.5) BS01 SF4 ? GO:0016491 ... O74028 27846502
    2845 5t5m:F (2.5) BS02 SF4 ? GO:0016491 ... O74028 27846502
    2846 5t5m:F (2.5) BS03 SF4 ? GO:0016491 ... O74028 27846502
    2847 5t5m:F (2.5) BS04 SF4 ? GO:0016491 ... O74028 27846502
    2848 5t5m:F (2.5) BS05 SF4 ? GO:0016491 ... O74028 27846502
    2849 5t5m:F (2.5) BS06 SF4 ? GO:0016491 ... O74028 27846502
    2850 5t5m:F (2.5) BS07 SF4 ? GO:0016491 ... O74028 27846502
    2851 5t5m:F (2.5) BS08 SF4 ? GO:0016491 ... O74028 27846502
    2852 5t5m:G (2.5) BS01 SF4 ? GO:0016491 ... Q1MVD4 27846502
    2853 5t5m:G (2.5) BS02 SF4 ? GO:0016491 ... Q1MVD4 27846502
    2854 5t61:B (2.55) BS01 SF4 N/A GO:0015948 ... N/A 27846502
    2855 5t61:E (2.55) BS01 SF4 N/A N/A N/A 27846502
    2856 5t61:E (2.55) BS02 SF4 N/A N/A N/A 27846502
    2857 5t61:F (2.55) BS01 SF4 N/A N/A N/A 27846502
    2858 5t61:F (2.55) BS02 SF4 N/A N/A N/A 27846502
    2859 5t61:F (2.55) BS03 SF4 N/A N/A N/A 27846502
    2860 5t61:F (2.55) BS04 SF4 N/A N/A N/A 27846502
    2861 5t61:F (2.55) BS05 SF4 N/A N/A N/A 27846502
    2862 5t61:F (2.55) BS06 SF4 N/A N/A N/A 27846502
    2863 5t61:F (2.55) BS07 SF4 N/A N/A N/A 27846502
    2864 5t61:F (2.55) BS08 SF4 N/A N/A N/A 27846502
    2865 5t61:F (2.55) BS09 SF4 N/A N/A N/A 27846502
    2866 5t61:H (2.55) BS01 SF4 N/A GO:0015948 ... N/A 27846502
    2867 5t61:K (2.55) BS01 SF4 N/A N/A N/A 27846502
    2868 5t61:K (2.55) BS02 SF4 N/A N/A N/A 27846502
    2869 5t61:L (2.55) BS01 SF4 N/A N/A N/A 27846502
    2870 5t61:L (2.55) BS02 SF4 N/A N/A N/A 27846502
    2871 5t61:L (2.55) BS03 SF4 N/A N/A N/A 27846502
    2872 5t61:L (2.55) BS04 SF4 N/A N/A N/A 27846502
    2873 5t61:L (2.55) BS05 SF4 N/A N/A N/A 27846502
    2874 5t61:L (2.55) BS06 SF4 N/A N/A N/A 27846502
    2875 5t61:L (2.55) BS07 SF4 N/A N/A N/A 27846502
    2876 5t61:L (2.55) BS08 SF4 N/A N/A N/A 27846502
    2877 5t61:L (2.55) BS09 SF4 N/A N/A N/A 27846502
    2878 5t61:N (2.55) BS01 SF4 N/A GO:0015948 ... N/A 27846502
    2879 5t61:Q (2.55) BS01 SF4 N/A N/A N/A 27846502
    2880 5t61:Q (2.55) BS02 SF4 N/A N/A N/A 27846502
    2881 5t61:R (2.55) BS01 SF4 N/A N/A N/A 27846502
    2882 5t61:R (2.55) BS02 SF4 N/A N/A N/A 27846502
    2883 5t61:R (2.55) BS03 SF4 N/A N/A N/A 27846502
    2884 5t61:R (2.55) BS04 SF4 N/A N/A N/A 27846502
    2885 5t61:R (2.55) BS05 SF4 N/A N/A N/A 27846502
    2886 5t61:R (2.55) BS06 SF4 N/A N/A N/A 27846502
    2887 5t61:R (2.55) BS07 SF4 N/A N/A N/A 27846502
    2888 5t61:R (2.55) BS08 SF4 N/A N/A N/A 27846502
    2889 5t61:R (2.55) BS09 SF4 N/A N/A N/A 27846502
    2890 5t61:T (2.55) BS01 SF4 N/A GO:0015948 ... N/A 27846502
    2891 5t61:W (2.55) BS01 SF4 N/A N/A N/A 27846502
    2892 5t61:W (2.55) BS02 SF4 N/A N/A N/A 27846502
    2893 5t61:X (2.55) BS01 SF4 N/A N/A N/A 27846502
    2894 5t61:X (2.55) BS02 SF4 N/A N/A N/A 27846502
    2895 5t61:X (2.55) BS03 SF4 N/A N/A N/A 27846502
    2896 5t61:X (2.55) BS04 SF4 N/A N/A N/A 27846502
    2897 5t61:X (2.55) BS05 SF4 N/A N/A N/A 27846502
    2898 5t61:X (2.55) BS06 SF4 N/A N/A N/A 27846502
    2899 5t61:X (2.55) BS07 SF4 N/A N/A N/A 27846502
    2900 5t61:X (2.55) BS08 SF4 N/A N/A N/A 27846502
    2901 5t61:X (2.55) BS09 SF4 N/A N/A N/A 27846502
    2902 5t61:Z (2.55) BS01 SF4 N/A GO:0015948 ... N/A 27846502
    2903 5t61:c (2.55) BS01 SF4 N/A N/A N/A 27846502
    2904 5t61:c (2.55) BS02 SF4 N/A N/A N/A 27846502
    2905 5t61:d (2.55) BS01 SF4 N/A N/A N/A 27846502
    2906 5t61:d (2.55) BS02 SF4 N/A N/A N/A 27846502
    2907 5t61:d (2.55) BS03 SF4 N/A N/A N/A 27846502
    2908 5t61:d (2.55) BS04 SF4 N/A N/A N/A 27846502
    2909 5t61:d (2.55) BS05 SF4 N/A N/A N/A 27846502
    2910 5t61:d (2.55) BS06 SF4 N/A N/A N/A 27846502
    2911 5t61:d (2.55) BS07 SF4 N/A N/A N/A 27846502
    2912 5t61:d (2.55) BS08 SF4 N/A N/A N/A 27846502
    2913 5t61:d (2.55) BS09 SF4 N/A N/A N/A 27846502
    2914 5t61:f (2.55) BS01 SF4 N/A GO:0015948 ... N/A 27846502
    2915 5t61:i (2.55) BS01 SF4 N/A N/A N/A 27846502
    2916 5t61:i (2.55) BS02 SF4 N/A N/A N/A 27846502
    2917 5t61:j (2.55) BS01 SF4 N/A N/A N/A 27846502
    2918 5t61:j (2.55) BS02 SF4 N/A N/A N/A 27846502
    2919 5t61:j (2.55) BS03 SF4 N/A N/A N/A 27846502
    2920 5t61:j (2.55) BS04 SF4 N/A N/A N/A 27846502
    2921 5t61:j (2.55) BS05 SF4 N/A N/A N/A 27846502
    2922 5t61:j (2.55) BS06 SF4 N/A N/A N/A 27846502
    2923 5t61:j (2.55) BS07 SF4 N/A N/A N/A 27846502
    2924 5t61:j (2.55) BS08 SF4 N/A N/A N/A 27846502
    2925 5t61:j (2.55) BS09 SF4 N/A N/A N/A 27846502
    2926 5t61:l (2.55) BS01 SF4 N/A GO:0015948 ... N/A 27846502
    2927 5t61:o (2.55) BS01 SF4 N/A N/A N/A 27846502
    2928 5t61:o (2.55) BS02 SF4 N/A N/A N/A 27846502
    2929 5t61:p (2.55) BS01 SF4 N/A N/A N/A 27846502
    2930 5t61:p (2.55) BS02 SF4 N/A N/A N/A 27846502
    2931 5t61:p (2.55) BS03 SF4 N/A N/A N/A 27846502
    2932 5t61:p (2.55) BS04 SF4 N/A N/A N/A 27846502
    2933 5t61:p (2.55) BS05 SF4 N/A N/A N/A 27846502
    2934 5t61:p (2.55) BS06 SF4 N/A N/A N/A 27846502
    2935 5t61:p (2.55) BS07 SF4 N/A N/A N/A 27846502
    2936 5t61:p (2.55) BS08 SF4 N/A N/A N/A 27846502
    2937 5t61:p (2.55) BS09 SF4 N/A N/A N/A 27846502
    2938 5t61:r (2.55) BS01 SF4 N/A GO:0015948 ... N/A 27846502
    2939 5t61:u (2.55) BS01 SF4 N/A N/A N/A 27846502
    2940 5t61:u (2.55) BS02 SF4 N/A N/A N/A 27846502
    2941 5t61:v (2.55) BS01 SF4 N/A N/A N/A 27846502
    2942 5t61:v (2.55) BS02 SF4 N/A N/A N/A 27846502
    2943 5t61:v (2.55) BS03 SF4 N/A N/A N/A 27846502
    2944 5t61:v (2.55) BS04 SF4 N/A N/A N/A 27846502
    2945 5t61:v (2.55) BS05 SF4 N/A N/A N/A 27846502
    2946 5t61:v (2.55) BS06 SF4 N/A N/A N/A 27846502
    2947 5t61:v (2.55) BS07 SF4 N/A N/A N/A 27846502
    2948 5t61:v (2.55) BS08 SF4 N/A N/A N/A 27846502
    2949 5t61:v (2.55) BS09 SF4 N/A N/A N/A 27846502
    2950 5t8y:A (2.653) BS01 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2951 5t8y:A (2.653) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2952 5t8y:B (2.653) BS02 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2953 5t8y:B (2.653) BS03 SF4 1.17.99.6 GO:0005737 ... P97030 27638883
    2954 5tgs:A (2.548) BS01 SF4 4.3.99.3 GO:0000287 ... O31677 28045519
    2955 5tgs:B (2.548) BS01 SF4 4.3.99.3 GO:0000287 ... O31677 28045519
    2956 5th5:A (2.407) BS01 SF4 4.3.99.3 GO:0000287 ... O31677 28045519
    2957 5th5:B (2.407) BS01 SF4 4.3.99.3 GO:0000287 ... O31677 28045519
    2958 5th5:C (2.407) BS01 SF4 4.3.99.3 GO:0000287 ... O31677 28045519
    2959 5th5:D (2.407) BS01 SF4 4.3.99.3 GO:0000287 ... O31677 28045519
    2960 5ul3:A (1.8) BS01 SF4 ? GO:0003824 ... O24770 28346939
    2961 5ul4:A (1.85) BS01 SF4 ? GO:0003824 ... O24770 28346939
    2962 5uq7:d (3.5) BS02 SF4 ? GO:0003723 ... P80373 29456023
    2963 5uq8:d (3.2) BS02 SF4 ? GO:0003723 ... P80373 29456023
    2964 5v1q:A (2.5) BS01 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2965 5v1q:A (2.5) BS02 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2966 5v1q:A (2.5) BS03 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2967 5v1q:B (2.5) BS01 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2968 5v1q:B (2.5) BS02 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2969 5v1q:B (2.5) BS03 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2970 5v1s:A (2.492) BS01 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2971 5v1s:A (2.492) BS02 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2972 5v1s:A (2.492) BS03 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2973 5v1s:B (2.492) BS01 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2974 5v1s:B (2.492) BS02 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2975 5v1s:B (2.492) BS03 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2976 5v1t:A (2.1) BS02 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2977 5v1t:A (2.1) BS03 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2978 5v1t:A (2.1) BS04 SF4 ? GO:0003824 ... A0A0Z8EWX1 28893989
    2979 5v8i:1d (3.25) BS02 SF4 ? GO:0003723 ... P62664 N/A
    2980 5v8i:2d (3.25) BS02 SF4 ? GO:0003723 ... P62664 N/A
    2981 5v8k:A (2.2) BS30 SF4 ? GO:0009579 ... Q1MX24 28751471
    2982 5vj7:A (2.55) BS01 SF4 ? GO:0000166 ... I6V148 28705933
    2983 5vj7:A (2.55) BS02 SF4 ? GO:0000166 ... I6V148 28705933
    2984 5vp2:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 28505372
    2985 5vp2:2d (2.8) BS02 SF4 ? GO:0003723 ... P80373 28505372
    2986 5vpn:B (4.2232) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 28615448
    2987 5vpn:F (4.2232) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 28615448
    2988 5vsl:A (1.972) BS01 SF4 4.2.-.- GO:0003824 ... Q8CBB9 28607080
    2989 5vsl:B (1.972) BS01 SF4 4.2.-.- GO:0003824 ... Q8CBB9 28607080
    2990 5vsm:A (1.7) BS01 SF4 4.2.-.- GO:0003824 ... Q8CBB9 28607080
    2991 5vsm:B (1.7) BS01 SF4 4.2.-.- GO:0003824 ... Q8CBB9 28607080
    2992 5w4k:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 28846667
    2993 5w4k:2d (2.7) BS02 SF4 ? GO:0003723 ... P80373 28846667
    2994 5wgg:A (2.036) BS02 SF4 ? GO:0003824 ... A3DDW1 28704043
    2995 5wgg:A (2.036) BS03 SF4 ? GO:0003824 ... A3DDW1 28704043
    2996 5wgg:A (2.036) BS04 SF4 ? GO:0003824 ... A3DDW1 28704043
    2997 5why:A (2.692) BS01 SF4 ? GO:0003824 ... A3DDW1 28704043
    2998 5why:A (2.692) BS02 SF4 ? GO:0003824 ... A3DDW1 28704043
    2999 5why:A (2.692) BS03 SF4 ? GO:0003824 ... A3DDW1 28704043
    3000 5why:B (2.692) BS01 SF4 ? GO:0003824 ... A3DDW1 28704043
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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