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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 5exe:E (1.88) BS02 SF4 1.2.7.10 GO:0016491 ... Q2RI40 26712008
    2402 5exe:F (1.88) BS01 SF4 1.2.7.10 GO:0003824 ... Q2RI42 26712008
    2403 5exi:A (2.28) BS01 SF4 2.8.1.8 GO:0003824 ... P9WK91 27506792
    2404 5exi:A (2.28) BS02 SF4 2.8.1.8 GO:0003824 ... P9WK91 27506792
    2405 5exj:A (1.64) BS01 SF4 2.8.1.8 GO:0003824 ... P9WK91 27506792
    2406 5exj:A (1.64) BS02 SF4 2.8.1.8 GO:0003824 ... P9WK91 27506792
    2407 5exk:A (1.86) BS03 SF4 2.8.1.8 GO:0003824 ... P9WK91 27506792
    2408 5exk:C (1.86) BS03 SF4 2.8.1.8 GO:0003824 ... P9WK91 27506792
    2409 5exk:E (1.86) BS03 SF4 2.8.1.8 GO:0003824 ... P9WK91 27506792
    2410 5exk:G (1.86) BS03 SF4 2.8.1.8 GO:0003824 ... P9WK91 27506792
    2411 5exk:I (1.86) BS03 SF4 2.8.1.8 GO:0003824 ... P9WK91 27506792
    2412 5exk:K (1.86) BS03 SF4 2.8.1.8 GO:0003824 ... P9WK91 27506792
    2413 5exr:B (3.6) BS01 SF4 2.7.7.- GO:0003677 ... P49643 26975377
    2414 5exr:F (3.6) BS01 SF4 2.7.7.- GO:0003677 ... P49643 26975377
    2415 5f0q:A (2.21) BS03 SF4 2.7.7.- GO:0006269 ... P49643 26975377
    2416 5f0q:B (2.21) BS03 SF4 2.7.7.- GO:0006269 ... P49643 26975377
    2417 5f0s:A (3.0) BS03 SF4 2.7.7.- GO:0006269 ... P49643 26975377
    2418 5f0s:B (3.0) BS03 SF4 2.7.7.- GO:0006269 ... P49643 26975377
    2419 5f33:A (1.45) BS01 SF4 2.5.1.72 GO:0005737 ... Q9X1X7 27545412
    2420 5f35:A (1.6) BS01 SF4 2.5.1.72 GO:0005737 ... Q9X1X7 27545412
    2421 5f3d:A (1.9) BS01 SF4 2.5.1.72 GO:0005737 ... Q9X1X7 27545412
    2422 5f8k:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 26792896
    2423 5f8k:2d (2.8) BS02 SF4 ? GO:0003723 ... P80373 26792896
    2424 5fd1:A (1.9) BS01 SF4 ? GO:0003677 ... P00214 8245025
    2425 5fdu:1d (2.9) BS02 SF4 ? GO:0003723 ... P80373 26792896
    2426 5fdu:2d (2.9) BS02 SF4 ? GO:0003723 ... P80373 26792896
    2427 5fdv:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 26792896
    2428 5fdv:2d (2.8) BS02 SF4 ? GO:0003723 ... P80373 26792896
    2429 5fep:A (1.45) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 27102684
    2430 5fes:A (1.27) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 27102684
    2431 5few:A (1.17) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 27102684
    2432 5fex:A (1.32) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 27102684
    2433 5ff2:A (1.47) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 27102684
    2434 5ff3:A (1.18) BS01 SF4 1.8.-.- GO:0003824 ... Q9X0Z6 27102684
    2435 5fle:X (1.23) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 29997808
    2436 5g5g:B (1.7) BS01 SF4 1.2.99.6 GO:0005515 ... P77324 27622978
    2437 5g5h:B (2.3) BS01 SF4 1.2.99.6 GO:0005515 ... P77324 27622978
    2438 5gep:A (2.1) BS01 SF4 1.8.1.2 GO:0004783 ... P17846 9315849
    2439 5gpn:Y (5.4) BS01 SF4 ? GO:0005743 ... A0A4X1V1H9 27654917
    2440 5gpn:Y (5.4) BS02 SF4 ? GO:0005743 ... A0A4X1V1H9 27654917
    2441 5gpn:Z (5.4) BS01 SF4 ? GO:0016651 ... F1S1A8 27654917
    2442 5gpn:a (5.4) BS01 SF4 ? GO:0008137 ... A0A8D1TL60 27654917
    2443 5gpn:b (5.4) BS01 SF4 N/A GO:0016020 ... N/A 27654917
    2444 5gpn:b (5.4) BS02 SF4 N/A GO:0016020 ... N/A 27654917
    2445 5gpn:c (5.4) BS01 SF4 7.1.1.2 GO:0005739 ... A0A4X1SZP7 27654917
    2446 5gup:B (4.0) BS01 SF4 7.1.1.2 GO:0005739 ... A0A4X1SZP7 27912063
    2447 5gup:C (4.0) BS01 SF4 ? GO:0016651 ... F1S1A8 27912063
    2448 5gup:G (4.0) BS02 SF4 ? GO:0005743 ... A0A4X1V1H9 27912063
    2449 5gup:G (4.0) BS03 SF4 ? GO:0005743 ... A0A4X1V1H9 27912063
    2450 5gup:H (4.0) BS02 SF4 N/A GO:0016020 ... N/A 27912063
    2451 5gup:H (4.0) BS03 SF4 N/A GO:0016020 ... N/A 27912063
    2452 5gup:I (4.0) BS01 SF4 ? GO:0008137 ... A0A8D1TL60 27912063
    2453 5h8c:A (2.29) BS01 SF4 3.6.4.12 GO:0003676 ... Q4JC68 26896802
    2454 5h8v:A (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    2455 5h8v:B (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    2456 5h8w:A (2.2) BS02 SF4 3.6.4.12 GO:0003676 ... Q9HM14 26896802
    2457 5h8y:A (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    2458 5h8y:B (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    2459 5h8y:C (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    2460 5h8y:D (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    2461 5h92:A (2.08) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    2462 5h92:B (2.08) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    2463 5hau:1d (3.0) BS02 SF4 ? GO:0003723 ... P80373 26809677
    2464 5hau:2d (3.0) BS02 SF4 ? GO:0003723 ... P80373 26809677
    2465 5hcp:1d (2.894) BS02 SF4 ? GO:0003723 ... P80373 26809677
    2466 5hcp:2d (2.894) BS02 SF4 ? GO:0003723 ... P80373 26809677
    2467 5hcq:1d (2.801) BS02 SF4 ? GO:0003723 ... P80373 26809677
    2468 5hcq:2d (2.801) BS02 SF4 ? GO:0003723 ... P80373 26809677
    2469 5hcr:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 26809677
    2470 5hcr:2d (2.8) BS02 SF4 ? GO:0003723 ... P80373 26809677
    2471 5hd1:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 26809677
    2472 5hd1:2d (2.7) BS02 SF4 ? GO:0003723 ... P80373 26809677
    2473 5hr6:A (2.88) BS03 SF4 2.1.1.192 GO:0000049 ... P36979 27081063
    2474 5hr6:B (2.88) BS04 SF4 2.1.1.192 GO:0000049 ... P36979 27081063
    2475 5hr7:A (2.4) BS03 SF4 2.1.1.192 GO:0000049 ... P36979 27081063
    2476 5hr7:B (2.4) BS02 SF4 2.1.1.192 GO:0000049 ... P36979 27081063
    2477 5i7m:A (1.93) BS01 SF4 2.7.7.- GO:0006269 ... P49643 28232525
    2478 5i7m:B (1.93) BS01 SF4 2.7.7.- GO:0006269 ... P49643 28232525
    2479 5ib7:32 (2.99) BS02 SF4 ? GO:0003723 ... P80373 27174928
    2480 5ib7:3E (2.99) BS02 SF4 ? GO:0003723 ... P80373 27174928
    2481 5ib8:32 (3.13) BS02 SF4 ? GO:0003723 ... P80373 27174928
    2482 5ib8:3E (3.13) BS02 SF4 ? GO:0003723 ... P80373 27174928
    2483 5ibb:32 (2.96) BS02 SF4 ? GO:0003723 ... P80373 27174928
    2484 5ibb:3E (2.96) BS02 SF4 ? GO:0003723 ... P80373 27174928
    2485 5j30:QD (3.2) BS02 SF4 ? GO:0003723 ... P80373 27681416
    2486 5j30:XD (3.2) BS02 SF4 ? GO:0003723 ... P80373 27681416
    2487 5j3c:QD (3.04) BS02 SF4 ? GO:0003723 ... P80373 27681416
    2488 5j3c:XD (3.04) BS02 SF4 ? GO:0003723 ... P80373 27681416
    2489 5j4b:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 27079977
    2490 5j4b:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 27079977
    2491 5j4c:1d (2.8) BS02 SF4 ? GO:0003723 ... P80373 27079977
    2492 5j4c:2d (2.8) BS02 SF4 ? GO:0003723 ... P80373 27079977
    2493 5j4z:B (5.8) BS01 SF4 N/A N/A N/A 27654913
    2494 5j4z:F (5.8) BS01 SF4 N/A N/A N/A 27654913
    2495 5j4z:G (5.8) BS01 SF4 N/A GO:0016020 ... N/A 27654913
    2496 5j4z:G (5.8) BS02 SF4 N/A GO:0016020 ... N/A 27654913
    2497 5j4z:I (5.8) BS01 SF4 N/A N/A N/A 27654913
    2498 5j4z:I (5.8) BS02 SF4 N/A N/A N/A 27654913
    2499 5j7y:B (6.7) BS01 SF4 N/A N/A N/A 27654913
    2500 5j7y:F (6.7) BS01 SF4 N/A N/A N/A 27654913
    2501 5j7y:G (6.7) BS01 SF4 N/A GO:0016020 ... N/A 27654913
    2502 5j7y:G (6.7) BS02 SF4 N/A GO:0016020 ... N/A 27654913
    2503 5j7y:I (6.7) BS01 SF4 N/A N/A N/A 27654913
    2504 5j7y:I (6.7) BS02 SF4 N/A N/A N/A 27654913
    2505 5j8b:d (2.6) BS02 SF4 ? GO:0003723 ... P80373 27092003
    2506 5j8k:B (7.8) BS01 SF4 N/A N/A N/A 27654913
    2507 5j8k:F (7.8) BS01 SF4 N/A N/A N/A 27654913
    2508 5j8k:G (7.8) BS01 SF4 N/A GO:0016020 ... N/A 27654913
    2509 5j8k:G (7.8) BS02 SF4 N/A GO:0016020 ... N/A 27654913
    2510 5j8k:I (7.8) BS01 SF4 N/A N/A N/A 27654913
    2511 5j8k:I (7.8) BS02 SF4 N/A N/A N/A 27654913
    2512 5jca:L (1.5) BS01 SF4 1.18.1.2
    1.8.1.19
    GO:0004324 ... Q8U195 28394885
    2513 5jca:L (1.5) BS02 SF4 1.18.1.2
    1.8.1.19
    GO:0004324 ... Q8U195 28394885
    2514 5jfc:L (1.598) BS01 SF4 1.18.1.2
    1.8.1.19
    GO:0004324 ... Q8U195 28394885
    2515 5jfc:L (1.598) BS02 SF4 1.18.1.2
    1.8.1.19
    GO:0004324 ... Q8U195 28394885
    2516 5jrd:S (1.2) BS01 SF4 1.12.99.6 GO:0005886 ... P69740 28001048
    2517 5jrd:T (1.2) BS01 SF4 1.12.99.6 GO:0005886 ... P69740 28001048
    2518 5jsh:A (1.3) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2519 5jsh:A (1.3) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2520 5jsh:A (1.3) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2521 5jsh:B (1.3) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    2522 5jsk:A (0.95) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2523 5jsk:A (0.95) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2524 5jsk:A (0.95) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2525 5jsk:B (0.95) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    2526 5jsu:A (1.4) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2527 5jsu:A (1.4) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2528 5jsu:A (1.4) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2529 5jsu:B (1.4) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    2530 5jsy:A (1.04) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2531 5jsy:A (1.04) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2532 5jsy:A (1.04) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2533 5jsy:B (1.04) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    2534 5jt1:A (1.35) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2535 5jt1:A (1.35) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2536 5jt1:A (1.35) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    2537 5jt1:B (1.35) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    2538 5kcm:A (2.149) BS02 SF4 4.1.99.13 GO:0000166 ... A9CH39 27992645
    2539 5kcm:B (2.149) BS02 SF4 4.1.99.13 GO:0000166 ... A9CH39 27992645
    2540 5kh0:A (2.8) BS01 SF4 ? GO:0002098 ... A6LMQ7 28553946
    2541 5kh0:B (2.8) BS01 SF4 ? GO:0002098 ... A6LMQ7 28553946
    2542 5kh0:C (2.8) BS01 SF4 ? GO:0002098 ... A6LMQ7 28553946
    2543 5kh0:D (2.8) BS01 SF4 ? GO:0002098 ... A6LMQ7 28553946
    2544 5kn8:A (1.81) BS03 SF4 3.2.2.31 GO:0003677 ... P83847 28130451
    2545 5kn9:A (1.93) BS03 SF4 3.2.2.31 GO:0003677 ... P83847 28130451
    2546 5ktm:A (1.44) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 27404889
    2547 5ktn:A (1.34) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 27404889
    2548 5kto:A (1.442) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 27404889
    2549 5ktp:A (1.542) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 27404889
    2550 5ktr:A (1.34) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 27404889
    2551 5kts:A (1.34) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 27404889
    2552 5ktt:A (1.5) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 27404889
    2553 5l2r:A (2.054) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 27528683
    2554 5l2r:B (2.054) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 27528683
    2555 5l8r:A (2.6) BS42 SF4 1.97.1.12 GO:0000287 ... P05310 28248295
    2556 5l8r:B (2.6) BS05 SF4 1.97.1.12 GO:0000287 ... A0A0F6NGI2 28248295
    2557 5l8r:C (2.6) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 28248295
    2558 5l8r:C (2.6) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 28248295
    2559 5la3:A (2.29) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 28722011
    2560 5la3:A (2.29) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 28722011
    2561 5la3:A (2.29) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 28722011
    2562 5la3:A (2.29) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 28722011
    2563 5la3:B (2.29) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 28722011
    2564 5la3:B (2.29) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 28722011
    2565 5la3:B (2.29) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 28722011
    2566 5la3:B (2.29) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 28722011
    2567 5lc5:B (4.35) BS01 SF4 7.1.1.2 GO:0008137 ... P42026 27509854
    2568 5lc5:D (4.35) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 27509854
    2569 5lc5:F (4.35) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 27509854
    2570 5lc5:G (4.35) BS01 SF4 7.1.1.2 GO:0008137 ... P15690 27509854
    2571 5lc5:G (4.35) BS02 SF4 7.1.1.2 GO:0008137 ... P15690 27509854
    2572 5lc5:I (4.35) BS01 SF4 7.1.1.2 GO:0016020 ... P42028 27509854
    2573 5lc5:I (4.35) BS02 SF4 7.1.1.2 GO:0016020 ... P42028 27509854
    2574 5ldw:B (4.27) BS01 SF4 7.1.1.2 GO:0008137 ... P42026 27509854
    2575 5ldw:D (4.27) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 27509854
    2576 5ldw:F (4.27) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 27509854
    2577 5ldw:G (4.27) BS01 SF4 7.1.1.2 GO:0008137 ... P15690 27509854
    2578 5ldw:G (4.27) BS02 SF4 7.1.1.2 GO:0008137 ... P15690 27509854
    2579 5ldw:I (4.27) BS01 SF4 7.1.1.2 GO:0016020 ... P42028 27509854
    2580 5ldw:I (4.27) BS02 SF4 7.1.1.2 GO:0016020 ... P42028 27509854
    2581 5ldx:B (5.6) BS01 SF4 7.1.1.2 GO:0008137 ... P42026 27509854
    2582 5ldx:D (5.6) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 27509854
    2583 5ldx:F (5.6) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 27509854
    2584 5ldx:G (5.6) BS01 SF4 7.1.1.2 GO:0008137 ... P15690 27509854
    2585 5ldx:G (5.6) BS02 SF4 7.1.1.2 GO:0008137 ... P15690 27509854
    2586 5ldx:I (5.6) BS01 SF4 7.1.1.2 GO:0016020 ... P42028 27509854
    2587 5ldx:I (5.6) BS02 SF4 7.1.1.2 GO:0016020 ... P42028 27509854
    2588 5lfa:A (2.5) BS03 SF4 4.1.99.13 GO:0000166 ... A9CH39 27992645
    2589 5ll6:h (3.9) BS02 SF4 ? GO:0000054 ... Q03195 28368393
    2590 5ll6:h (3.9) BS03 SF4 ? GO:0000054 ... Q03195 28368393
    2591 5lmm:S (1.2) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 N/A
    2592 5lmm:T (1.2) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 N/A
    2593 5lnk:1 (3.9) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 27595392
    2594 5lnk:3 (3.9) BS01 SF4 N/A GO:0008137 ... N/A 27595392
    2595 5lnk:3 (3.9) BS02 SF4 N/A GO:0008137 ... N/A 27595392
    2596 5lnk:4 (3.9) BS01 SF4 ? GO:0005739 ... W5PJ73 27595392
    2597 5lnk:6 (3.9) BS01 SF4 7.1.1.2 GO:0008137 ... P42026 27595392
    2598 5lnk:9 (3.9) BS01 SF4 7.1.1.2 GO:0016020 ... P42028 27595392
    2599 5lnk:9 (3.9) BS02 SF4 7.1.1.2 GO:0016020 ... P42028 27595392
    2600 5lqm:A (1.62) BS01 SF4 2.5.1.72 GO:0005737 ... Q9X1X7 27545412

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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