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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 4w2i:AD (2.7) BS02 SF4 ? GO:0003723 ... P80373 25306922
    2002 4w2i:CD (2.7) BS02 SF4 ? GO:0003723 ... P80373 25306922
    2003 4wcx:A (1.59) BS01 SF4 ? GO:0003824 ... D3T7F1 25605932
    2004 4wcx:A (1.59) BS02 SF4 ? GO:0003824 ... D3T7F1 25605932
    2005 4wcx:C (1.59) BS01 SF4 ? GO:0003824 ... D3T7F1 25605932
    2006 4wcx:C (1.59) BS02 SF4 ? GO:0003824 ... D3T7F1 25605932
    2007 4wpo:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    2008 4wpo:DD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    2009 4wqf:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    2010 4wqf:DD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    2011 4wqu:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    2012 4wqu:DD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    2013 4wqy:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    2014 4wqy:DD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    2015 4wz7:A (3.6) BS02 SF4 N/A N/A N/A 25554780
    2016 4wz7:A (3.6) BS03 SF4 N/A N/A N/A 25554780
    2017 4wz7:B (3.6) BS01 SF4 N/A GO:0051539 ... N/A 25554780
    2018 4wz7:I (3.6) BS01 SF4 N/A GO:0016020 ... N/A 25554780
    2019 4wz7:I (3.6) BS02 SF4 N/A GO:0016020 ... N/A 25554780
    2020 4wz7:K (3.6) BS01 SF4 1.6.99.3 GO:0008137 ... Q9UUT7 25554780
    2021 4wza:E (1.8995) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 25522159
    2022 4wza:F (1.8995) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 25522159
    2023 4wza:G (1.8995) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 25522159
    2024 4wza:H (1.8995) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 25522159
    2025 4wzb:E (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    2026 4wzb:F (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    2027 4wzb:G (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    2028 4wzb:H (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 16123301
    2029 4xdc:A (1.63) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2030 4xdc:A (1.63) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2031 4xdc:A (1.63) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2032 4xdc:A (1.63) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2033 4xdc:B (1.63) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2034 4xdc:B (1.63) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2035 4xdc:B (1.63) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2036 4xdc:B (1.63) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2037 4xdd:A (1.599) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2038 4xdd:A (1.599) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2039 4xdd:A (1.599) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2040 4xdd:A (1.599) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2041 4xdd:B (1.599) BS01 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2042 4xdd:B (1.599) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2043 4xdd:B (1.599) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2044 4xdd:B (1.599) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 29896366
    2045 4xk8:A (2.8) BS46 SF4 1.97.1.12 GO:0000287 ... P05310 26023133
    2046 4xk8:B (2.8) BS08 SF4 1.97.1.12 GO:0000287 ... P05311 26023133
    2047 4xk8:C (2.8) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 26023133
    2048 4xk8:C (2.8) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 26023133
    2049 4xk8:a (2.8) BS47 SF4 1.97.1.12 GO:0000287 ... P05310 26023133
    2050 4xk8:b (2.8) BS07 SF4 1.97.1.12 GO:0000287 ... P05311 26023133
    2051 4xk8:c (2.8) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 26023133
    2052 4xk8:c (2.8) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 26023133
    2053 4y28:A (2.8) BS05 SF4 1.97.1.12 GO:0000287 ... P05310 26076232
    2054 4y28:B (2.8) BS05 SF4 1.97.1.12 GO:0000287 ... P05311 26076232
    2055 4y28:C (2.8) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 26076232
    2056 4y28:C (2.8) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 26076232
    2057 4y4o:1d (2.3) BS02 SF4 ? GO:0003723 ... P80373 25775268
    2058 4y4o:2d (2.3) BS02 SF4 ? GO:0003723 ... P80373 25775268
    2059 4y4p:1d (2.5) BS02 SF4 ? GO:0003723 ... P80373 25775268
    2060 4y4p:2d (2.5) BS02 SF4 ? GO:0003723 ... P80373 25775268
    2061 4ydd:A (1.86) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2062 4ydd:B (1.86) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2063 4ydd:B (1.86) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2064 4ydd:B (1.86) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2065 4ydd:C (1.86) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2066 4ydd:D (1.86) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2067 4ydd:D (1.86) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2068 4ydd:D (1.86) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2069 4ydd:E (1.86) BS01 SF4 ? GO:0009061 ... G8QM55 26940877
    2070 4ydd:F (1.86) BS02 SF4 ? GO:0009055 ... G8QM54 26940877
    2071 4ydd:F (1.86) BS03 SF4 ? GO:0009055 ... G8QM54 26940877
    2072 4ydd:F (1.86) BS04 SF4 ? GO:0009055 ... G8QM54 26940877
    2073 4ylf:B (2.301) BS01 SF4 ? GO:0000166 ... Q9X1X5 26139605
    2074 4ylf:B (2.301) BS02 SF4 ? GO:0000166 ... Q9X1X5 26139605
    2075 4ylf:D (2.301) BS01 SF4 ? GO:0000166 ... Q9X1X5 26139605
    2076 4ylf:D (2.301) BS02 SF4 ? GO:0000166 ... Q9X1X5 26139605
    2077 4yoq:A (2.21) BS03 SF4 3.2.2.31 GO:0000701 ... P83847 25995449
    2078 4yph:A (2.32) BS03 SF4 3.2.2.31 GO:0000701 ... P83847 25995449
    2079 4ypr:A (2.59) BS04 SF4 3.2.2.31 GO:0000701 ... P83847 25995449
    2080 4ypr:B (2.59) BS03 SF4 3.2.2.31 GO:0000701 ... P83847 25995449
    2081 4yry:B (2.4) BS01 SF4 ? GO:0000166 ... Q9X1X5 26139605
    2082 4yry:B (2.4) BS02 SF4 ? GO:0000166 ... Q9X1X5 26139605
    2083 4yry:D (2.4) BS01 SF4 ? GO:0000166 ... Q9X1X5 26139605
    2084 4yry:D (2.4) BS02 SF4 ? GO:0000166 ... Q9X1X5 26139605
    2085 4ysx:B (2.25) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2086 4ysx:F (2.25) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2087 4ysy:B (3.1) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2088 4ysy:F (3.1) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2089 4ysz:B (3.3) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2090 4ysz:F (3.3) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2091 4yt0:B (3.66) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2092 4yt0:F (3.66) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2093 4ytm:B (3.4) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2094 4ytm:F (3.4) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 26198225
    2095 4ytn:B (3.0) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 N/A
    2096 4ytn:F (3.0) BS02 SF4 1.3.5.1 GO:0005515 ... O44074 N/A
    2097 4ytp:B (3.1) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 26198225
    2098 4yxd:B (3.0) BS02 SF4 1.3.5.1 GO:0005515 ... Q007T0 26198225
    2099 4z3s:1d (2.65) BS02 SF4 ? GO:0003723 ... P80373 26028538
    2100 4z3s:2d (2.65) BS02 SF4 ? GO:0003723 ... P80373 26028538
    2101 4z3w:A (2.208) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2102 4z3w:B (2.208) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2103 4z3w:C (2.208) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2104 4z3w:D (2.208) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2105 4z3w:E (2.208) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2106 4z3w:E (2.208) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2107 4z3w:E (2.208) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2108 4z3w:F (2.208) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2109 4z3w:F (2.208) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2110 4z3w:F (2.208) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2111 4z3w:G (2.208) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2112 4z3w:G (2.208) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2113 4z3w:G (2.208) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2114 4z3w:H (2.208) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2115 4z3w:H (2.208) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2116 4z3w:H (2.208) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2117 4z3x:A (1.85) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2118 4z3x:B (1.85) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2119 4z3x:C (1.85) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2120 4z3x:D (1.85) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2121 4z3x:E (1.85) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2122 4z3x:E (1.85) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2123 4z3x:E (1.85) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2124 4z3x:F (1.85) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2125 4z3x:F (1.85) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2126 4z3x:F (1.85) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2127 4z3x:G (1.85) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2128 4z3x:G (1.85) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2129 4z3x:G (1.85) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2130 4z3x:H (1.85) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2131 4z3x:H (1.85) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2132 4z3x:H (1.85) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2133 4z3y:A (2.359) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2134 4z3y:B (2.359) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2135 4z3y:C (2.359) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2136 4z3y:D (2.359) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2137 4z3y:E (2.359) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2138 4z3y:E (2.359) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2139 4z3y:E (2.359) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2140 4z3y:F (2.359) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2141 4z3y:F (2.359) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2142 4z3y:F (2.359) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2143 4z3y:G (2.359) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2144 4z3y:G (2.359) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2145 4z3y:G (2.359) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2146 4z3y:H (2.359) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2147 4z3y:H (2.359) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2148 4z3y:H (2.359) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2149 4z3z:A (2.666) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2150 4z3z:B (2.666) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2151 4z3z:C (2.666) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2152 4z3z:D (2.666) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2153 4z3z:E (2.666) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2154 4z3z:E (2.666) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2155 4z3z:E (2.666) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2156 4z3z:F (2.666) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2157 4z3z:F (2.666) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2158 4z3z:F (2.666) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2159 4z3z:G (2.666) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2160 4z3z:G (2.666) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2161 4z3z:G (2.666) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2162 4z3z:H (2.666) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2163 4z3z:H (2.666) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2164 4z3z:H (2.666) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2165 4z40:A (2.35) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2166 4z40:B (2.35) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2167 4z40:C (2.35) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2168 4z40:D (2.35) BS01 SF4 ? GO:0009055 ... Q39TV8 26120796
    2169 4z40:E (2.35) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2170 4z40:E (2.35) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2171 4z40:E (2.35) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2172 4z40:F (2.35) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2173 4z40:F (2.35) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2174 4z40:F (2.35) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2175 4z40:G (2.35) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2176 4z40:G (2.35) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2177 4z40:G (2.35) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2178 4z40:H (2.35) BS01 SF4 ? GO:0046872 ... Q39TV9 26120796
    2179 4z40:H (2.35) BS02 SF4 ? GO:0046872 ... Q39TV9 26120796
    2180 4z40:H (2.35) BS03 SF4 ? GO:0046872 ... Q39TV9 26120796
    2181 4z8c:1d (2.9) BS02 SF4 ? GO:0003723 ... P80373 25984972
    2182 4z8c:2d (2.9) BS02 SF4 ? GO:0003723 ... P80373 25984972
    2183 4zbx:A (1.7) BS01 SF4 3.2.2.27 N/A Q96YD0 26318717
    2184 4zby:A (1.7) BS01 SF4 3.2.2.27 N/A Q96YD0 26318717
    2185 4zbz:A (1.9) BS01 SF4 3.2.2.27 N/A Q96YD0 26318717
    2186 4zer:1d (3.1) BS02 SF4 ? GO:0003723 ... P80373 25984971
    2187 4zer:2d (3.1) BS02 SF4 ? GO:0003723 ... P80373 25984971
    2188 4zk6:A (1.895) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 27224840
    2189 4zk6:B (1.895) BS01 SF4 2.5.1.72 GO:0005737 ... O57767 27224840
    2190 5a4f:S (1.25) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 26619250
    2191 5a4f:T (1.25) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 26619250
    2192 5a4i:S (1.23) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 26619250
    2193 5a4i:T (1.23) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 26619250
    2194 5a4m:S (1.7) BS01 SF4 1.12.99.6 GO:0008901 ... P69739 26619250
    2195 5a4m:T (1.7) BS01 SF4 1.12.99.6 GO:0008901 ... P69739 26619250
    2196 5aa5:A (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2197 5aa5:A (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2198 5aa5:A (2.497) BS03 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2199 5aa5:B (2.497) BS01 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450
    2200 5aa5:B (2.497) BS02 SF4 1.12.99.6 GO:0008901 ... Q7WXQ4 26749450

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218