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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 8362 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a6l:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 9837955
    2 1aa6:A (2.3) BS01 SF4 1.17.98.4 GO:0003954 ... P07658 9036855
    3 1aco:A (2.05) BS02 SF4 4.2.1.3 GO:0003994 ... P20004 8151704
    4 1ami:A (2.0) BS01 SF4 4.2.1.3 GO:0003994 ... P20004 7675781
    5 1amj:A (2.0) BS02 SF4 4.2.1.3 GO:0003994 ... P20004 7675781
    6 1ao0:A (2.8) BS02 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    7 1ao0:B (2.8) BS03 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    8 1ao0:C (2.8) BS02 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    9 1ao0:D (2.8) BS03 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    10 1aop:A (1.6) BS02 SF4 1.8.1.2 GO:0004783 ... P17846 7569952
    11 1aor:A (2.3) BS02 SF4 1.2.7.5 GO:0009055 ... Q51739 7878465
    12 1aor:B (2.3) BS02 SF4 1.2.7.5 GO:0009055 ... Q51739 7878465
    13 1axq:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 N/A
    14 1b0j:A (2.5) BS01 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    15 1b0k:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    16 1b0m:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    17 1b0p:A (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    18 1b0p:A (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    19 1b0p:A (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    20 1b0p:B (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    21 1b0p:B (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    22 1b0p:B (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    23 1b0t:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 N/A
    24 1b0v:A (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    25 1b0v:B (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    26 1b0v:C (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    27 1b0v:D (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    28 1b0y:A (0.93) BS01 SF4 ? GO:0009055 ... P00260 10531472
    29 1b25:A (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    30 1b25:B (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    31 1b25:C (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    32 1b25:D (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    33 1b4n:A (2.4) BS02 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    34 1b4n:B (2.4) BS02 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    35 1b4n:C (2.4) BS02 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    36 1b4n:D (2.4) BS02 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    37 1bc6:A (-1.00) BS02 SF4 ? GO:0009055 ... Q45560 9657695
    38 1bd6:A (-1.00) BS02 SF4 ? GO:0009055 ... Q45560 9657695
    39 1blu:A (2.1) BS01 SF4 ? GO:0046872 ... P00208 8880900
    40 1blu:A (2.1) BS02 SF4 ? GO:0046872 ... P00208 8880900
    41 1bqx:A (-1.00) BS01 SF4 ? GO:0009055 ... Q45560 9874217
    42 1bqx:A (-1.00) BS02 SF4 ? GO:0009055 ... Q45560 9874217
    43 1bwe:A (-1.00) BS01 SF4 ? GO:0009055 ... Q45560 9874217
    44 1bwe:A (-1.00) BS02 SF4 ? GO:0009055 ... Q45560 9874217
    45 1c4a:A (2.4) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 10529166
    46 1c4a:A (2.4) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 10529166
    47 1c4a:A (2.4) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 10529166
    48 1c4a:A (2.4) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 10529166
    49 1c4c:A (2.4) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 10529166
    50 1c4c:A (2.4) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 10529166
    51 1c4c:A (2.4) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 10529166
    52 1c4c:A (2.4) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 10529166
    53 1c51:A (4.0) BS01 SF4 N/A N/A N/A 10066799
    54 1c51:B (4.0) BS01 SF4 N/A N/A N/A 10066799
    55 1c51:C (4.0) BS01 SF4 N/A N/A N/A 10066799
    56 1c51:C (4.0) BS02 SF4 N/A N/A N/A 10066799
    57 1c96:A (1.81) BS02 SF4 4.2.1.3 GO:0003994 ... P20004 10631981
    58 1c97:A (1.98) BS01 SF4 4.2.1.3 GO:0003994 ... P20004 10631981
    59 1cc1:L (2.15) BS01 SF4 1.12.99.6 GO:0008901 ... P13065 10378275
    60 1cc1:S (2.15) BS01 SF4 1.12.99.6 GO:0008901 ... P13063 10378275
    61 1cc1:S (2.15) BS02 SF4 1.12.99.6 GO:0008901 ... P13063 10378275
    62 1cc1:S (2.15) BS03 SF4 1.12.99.6 GO:0008901 ... P13063 10378275
    63 1cku:A (1.2) BS01 SF4 ? GO:0009055 ... P00260 10531472
    64 1cku:B (1.2) BS01 SF4 ? GO:0009055 ... P00260 10531472
    65 1clf:A (-1.00) BS01 SF4 ? GO:0009055 ... P00195 7556151
    66 1clf:A (-1.00) BS02 SF4 ? GO:0009055 ... P00195 7556151
    67 1cp2:A (1.93) BS01 SF4 1.18.6.1 GO:0005524 ... P00456 9677296
    68 1cp2:B (1.93) BS01 SF4 1.18.6.1 GO:0005524 ... P00456 9677296
    69 1d3w:A (1.7) BS01 SF4 ? GO:0003677 ... P00214 10866206
    70 1dax:A (-1.00) BS01 SF4 ? GO:0005506 ... P00210 9533888
    71 1de0:A (2.4) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 10651628
    72 1de0:B (2.4) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 10651628
    73 1dfd:A (-1.00) BS01 SF4 ? GO:0005506 ... P00210 9533888
    74 1dj7:A (1.6) BS01 SF4 1.8.7.2 GO:0005515 ... Q55389 10649999
    75 1djn:A (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    76 1djn:B (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    77 1djq:A (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    78 1djq:B (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    79 1dur:A (2.0) BS01 SF4 ? GO:0009055 ... P00193 N/A
    80 1dur:A (2.0) BS02 SF4 ? GO:0009055 ... P00193 N/A
    81 1dwl:A (-1.00) BS01 SF4 ? GO:0046872 ... P07485 10704202
    82 1e08:A (-1.00) BS01 SF4 1.12.7.2 N/A P07598 10748163
    83 1e08:A (-1.00) BS02 SF4 1.12.7.2 N/A P07598 10748163
    84 1e08:A (-1.00) BS03 SF4 1.12.7.2 N/A P07598 10748163
    85 1e1d:A (1.72) BS02 SF4 1.7.99.1 GO:0003824 ... P31101 11106482
    86 1e2u:A (1.6) BS01 SF4 1.7.99.1 GO:0003824 ... P31101 11106482
    87 1e3d:A (1.8) BS02 SF4 1.12.2.1 GO:0008901 ... Q9L869 11191224
    88 1e3d:C (1.8) BS02 SF4 1.12.2.1 GO:0008901 ... Q9L869 11191224
    89 1e7p:B (3.1) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 11248702
    90 1e7p:E (3.1) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 11248702
    91 1e7p:H (3.1) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 11248702
    92 1e7p:K (3.1) BS03 SF4 1.3.5.1 GO:0005886 ... P17596 11248702
    93 1e9v:A (1.79) BS02 SF4 1.7.99.1 GO:0003824 ... P31101 N/A
    94 1eyt:A (1.5) BS01 SF4 ? GO:0009055 ... P80176 11095707
    95 1f5b:A (1.62) BS02 SF4 ? GO:0003677 ... P00214 11875515
    96 1f5c:A (1.75) BS02 SF4 ? GO:0003677 ... P00214 11875515
    97 1fca:A (1.8) BS01 SF4 ? GO:0009055 ... P00198 15299316
    98 1fca:A (1.8) BS02 SF4 ? GO:0009055 ... P00198 15299316
    99 1fd2:A (1.9) BS01 SF4 ? GO:0003677 ... P00214 2153958
    100 1fda:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 8245025
    101 1fdb:A (2.2) BS01 SF4 ? GO:0003677 ... P00214 8245025
    102 1fdd:A (1.9) BS01 SF4 ? GO:0003677 ... P00214 8245026
    103 1fdi:A (2.9) BS02 SF4 1.17.98.4 GO:0003954 ... P07658 9036855
    104 1fdn:A (1.84) BS01 SF4 ? GO:0009055 ... P00198 7966291
    105 1fdn:A (1.84) BS02 SF4 ? GO:0009055 ... P00198 7966291
    106 1fdo:A (2.8) BS01 SF4 1.17.98.4 GO:0003954 ... P07658 9036855
    107 1feh:A (1.8) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 9836629
    108 1feh:A (1.8) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 9836629
    109 1feh:A (1.8) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 9836629
    110 1feh:A (1.8) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 9836629
    111 1fer:A (2.3) BS02 SF4 ? GO:0003677 ... P00214 15299532
    112 1ff2:A (2.3) BS01 SF4 ? GO:0003677 ... P00214 10961993
    113 1fgh:A (2.05) BS01 SF4 4.2.1.3 GO:0003994 ... P20004 8942997
    114 1fp6:A (2.15) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11101289
    115 1fp6:B (2.15) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11101289
    116 1fp6:C (2.15) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11101289
    117 1fp6:D (2.15) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11101289
    118 1frf:S (2.7) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 9751716
    119 1frf:S (2.7) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 9751716
    120 1frh:A (2.3) BS01 SF4 ? GO:0003677 ... P00214 8132582
    121 1fri:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 8132582
    122 1frj:A (2.3) BS01 SF4 ? GO:0003677 ... P00214 8132582
    123 1frk:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 8132582
    124 1frl:A (2.3) BS01 SF4 ? GO:0003677 ... P00214 8132582
    125 1frm:A (2.3) BS01 SF4 ? GO:0003677 ... P00214 8132582
    126 1frv:A (2.85) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 7854413
    127 1frv:A (2.85) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 7854413
    128 1frv:C (2.85) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 7854413
    129 1frv:C (2.85) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 7854413
    130 1frv:D (2.85) BS01 SF4 1.12.2.1 GO:0008901 ... P12944 7854413
    131 1frx:A (2.5) BS01 SF4 ? GO:0003677 ... P00214 7479727
    132 1ftc:A (2.35) BS01 SF4 ? GO:0003677 ... P00214 9188450
    133 1ftc:B (2.35) BS01 SF4 ? GO:0003677 ... P00214 9188450
    134 1fxr:A (2.3) BS01 SF4 ? GO:0005506 ... P00210 7803404
    135 1fxr:B (2.3) BS02 SF4 ? GO:0005506 ... P00210 7803404
    136 1g1m:A (2.25) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170381
    137 1g1m:B (2.25) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170381
    138 1g20:E (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    139 1g20:F (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    140 1g20:G (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    141 1g20:H (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    142 1g21:E (3.0) BS03 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    143 1g21:F (3.0) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    144 1g21:G (3.0) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    145 1g21:H (3.0) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170380
    146 1g3o:A (1.65) BS01 SF4 ? GO:0003677 ... P00214 11704670
    147 1g5p:A (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170381
    148 1g5p:B (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 11170381
    149 1g6b:A (1.9) BS01 SF4 ? GO:0003677 ... P00214 11704670
    150 1gao:A (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    151 1gao:B (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    152 1gao:C (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    153 1gao:D (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    154 1gn9:A (2.6) BS02 SF4 1.7.99.1 GO:0003824 ... Q01770 11941509
    155 1gn9:B (2.6) BS02 SF4 1.7.99.1 GO:0003824 ... Q01770 11941509
    156 1gnl:A (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... Q01770 11941509
    157 1gnl:B (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... Q01770 11941509
    158 1gnt:A (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... P31101 11941509
    159 1gph:1 (3.0) BS01 SF4 2.4.2.14 GO:0000287 ... P00497 8197456
    160 1gph:2 (3.0) BS02 SF4 2.4.2.14 GO:0000287 ... P00497 8197456
    161 1gph:3 (3.0) BS01 SF4 2.4.2.14 GO:0000287 ... P00497 8197456
    162 1gph:4 (3.0) BS01 SF4 2.4.2.14 GO:0000287 ... P00497 8197456
    163 1gt8:A (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    164 1gt8:A (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    165 1gt8:A (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    166 1gt8:A (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    167 1gt8:B (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    168 1gt8:B (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    169 1gt8:B (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    170 1gt8:B (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    171 1gt8:C (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    172 1gt8:C (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    173 1gt8:C (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    174 1gt8:C (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    175 1gt8:D (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    176 1gt8:D (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    177 1gt8:D (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    178 1gt8:D (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    179 1gte:A (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    180 1gte:A (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    181 1gte:A (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    182 1gte:A (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    183 1gte:B (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    184 1gte:B (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    185 1gte:B (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    186 1gte:B (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    187 1gte:C (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    188 1gte:C (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    189 1gte:C (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    190 1gte:C (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    191 1gte:D (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    192 1gte:D (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    193 1gte:D (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    194 1gte:D (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    195 1gth:A (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    196 1gth:A (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    197 1gth:A (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    198 1gth:A (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    199 1gth:B (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    200 1gth:B (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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