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BioLiP
Download all results in tab-seperated text for 91 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ezd:A (2.5) BS01 SEY ? GO:0005886 ... Q5QF96 22733730
    2 4ezd:A (2.5) BS02 SEY ? GO:0005886 ... Q5QF96 22733730
    3 4ezd:B (2.5) BS02 SEY ? GO:0005886 ... Q5QF96 22733730
    4 4ezd:B (2.5) BS03 SEY ? GO:0005886 ... Q5QF96 22733730
    5 4ezd:C (2.5) BS03 SEY ? GO:0005886 ... Q5QF96 22733730
    6 4ezd:C (2.5) BS04 SEY ? GO:0005886 ... Q5QF96 22733730
    7 5t3f:A (1.45) BS01 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    8 5t3f:A (1.45) BS02 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    9 5t3f:A (1.45) BS03 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    10 5t3f:A (1.45) BS04 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    11 5t3f:A (1.45) BS05 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    12 5t3f:A (1.45) BS06 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    13 5t3f:A (1.45) BS07 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    14 5t3f:A (1.45) BS08 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    15 5t3f:A (1.45) BS09 SEY 3.2.1.17 GO:0003796 ... P00698 27841370
    16 5t3g:A (1.55) BS01 SEY ? GO:0005576 ... P02883 27841370
    17 5t3g:A (1.55) BS02 SEY ? GO:0005576 ... P02883 27841370
    18 5t3g:A (1.55) BS03 SEY ? GO:0005576 ... P02883 27841370
    19 5t3g:A (1.55) BS04 SEY ? GO:0005576 ... P02883 27841370
    20 5t3g:A (1.55) BS05 SEY ? GO:0005576 ... P02883 27841370
    21 5t3g:A (1.55) BS06 SEY ? GO:0005576 ... P02883 27841370
    22 5t3g:A (1.55) BS07 SEY ? GO:0005576 ... P02883 27841370
    23 5t3g:A (1.55) BS08 SEY ? GO:0005576 ... P02883 27841370
    24 5t3g:A (1.55) BS09 SEY ? GO:0005576 ... P02883 27841370
    25 5t3h:A (1.55) BS02 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    26 5t3h:A (1.55) BS03 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    27 5t3h:A (1.55) BS04 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    28 5t3h:A (1.55) BS05 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    29 5t3h:A (1.55) BS06 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    30 5t3h:A (1.55) BS07 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    31 5t3h:A (1.55) BS08 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    32 5t3h:A (1.55) BS09 SEY 3.4.21.4 GO:0004175 ... P00760 27841370
    33 5t3i:A (1.6) BS01 SEY ? GO:0003674 ... P42212 27841370
    34 5t3i:A (1.6) BS02 SEY ? GO:0003674 ... P42212 27841370
    35 5t3i:A (1.6) BS03 SEY ? GO:0003674 ... P42212 27841370
    36 5t3i:A (1.6) BS04 SEY ? GO:0003674 ... P42212 27841370
    37 5t3i:A (1.6) BS05 SEY ? GO:0003674 ... P42212 27841370
    38 5t3i:A (1.6) BS06 SEY ? GO:0003674 ... P42212 27841370
    39 5t3i:A (1.6) BS07 SEY ? GO:0003674 ... P42212 27841370
    40 5t3i:A (1.6) BS08 SEY ? GO:0003674 ... P42212 27841370
    41 5t3i:A (1.6) BS09 SEY ? GO:0003674 ... P42212 27841370
    42 5t3i:A (1.6) BS10 SEY ? GO:0003674 ... P42212 27841370
    43 5t3j:A (2.55) BS01 SEY 3.1.3.15 GO:0004401 ... G7J7Q5 27841370
    44 5v51:A (2.92) BS01 SEY ? N/A H6U756 28798297
    45 5v51:B (2.92) BS01 SEY ? N/A H6U756 28798297
    46 5v51:D (2.92) BS01 SEY ? N/A H6U756 28798297
    47 5v51:E (2.92) BS01 SEY ? N/A H6U756 28798297
    48 5v51:E (2.92) BS02 SEY ? N/A H6U756 28798297
    49 5v51:F (2.92) BS01 SEY ? N/A H6U756 28798297
    50 5v51:G (2.92) BS01 SEY ? N/A H6U756 28798297
    51 5v51:G (2.92) BS02 SEY ? N/A H6U756 28798297
    52 5v51:G (2.92) BS03 SEY ? N/A H6U756 28798297
    53 6ccz:A (2.14) BS01 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    54 6ccz:A (2.14) BS02 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    55 6ccz:A (2.14) BS03 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    56 6ccz:A (2.14) BS04 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    57 6ccz:A (2.14) BS05 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    58 6ccz:A (2.14) BS06 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    59 6ccz:B (2.14) BS01 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    60 6ccz:B (2.14) BS02 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    61 6ccz:B (2.14) BS03 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    62 6ccz:B (2.14) BS04 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    63 6ccz:B (2.14) BS05 SEY 2.1.2.1 GO:0004372 ... G7ILW0 29868052
    64 7cqm:A (1.8) BS01 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    65 7cqm:A (1.8) BS02 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    66 7cqm:A (1.8) BS03 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    67 7cqm:A (1.8) BS04 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    68 7cqm:A (1.8) BS05 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    69 7cqm:A (1.8) BS06 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    70 7cqm:A (1.8) BS14 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    71 7cqm:B (1.8) BS02 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    72 7cqm:B (1.8) BS04 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    73 7cqm:B (1.8) BS05 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    74 7cqm:B (1.8) BS06 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    75 7cqm:B (1.8) BS07 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    76 7cqm:B (1.8) BS08 SEY 2.3.1.275 GO:0005886 ... O66905 N/A
    77 7cqo:A (1.71) BS01 SEY 3.2.1.17 GO:0003796 ... P00698 N/A
    78 7cqo:A (1.71) BS02 SEY 3.2.1.17 GO:0003796 ... P00698 N/A
    79 7cqo:A (1.71) BS03 SEY 3.2.1.17 GO:0003796 ... P00698 N/A
    80 7cqo:A (1.71) BS04 SEY 3.2.1.17 GO:0003796 ... P00698 N/A
    81 7cqo:A (1.71) BS05 SEY 3.2.1.17 GO:0003796 ... P00698 N/A
    82 8eju:A (1.74) BS01 SEY ? GO:0000976 ... Q88N41 N/A
    83 8eju:A (1.74) BS02 SEY ? GO:0000976 ... Q88N41 N/A
    84 8eju:B (1.74) BS01 SEY ? GO:0000976 ... Q88N41 N/A
    85 8eju:B (1.74) BS02 SEY ? GO:0000976 ... Q88N41 N/A
    86 8eju:B (1.74) BS03 SEY ? GO:0000976 ... Q88N41 N/A
    87 8ixw:A (1.8) BS01 SEY ? N/A A0A1Y9SHR5 N/A
    88 8ixw:A (1.8) BS02 SEY ? N/A A0A1Y9SHR5 N/A
    89 8ixw:A (1.8) BS03 SEY ? N/A A0A1Y9SHR5 N/A
    90 8ixw:B (1.8) BS01 SEY ? N/A A0A1Y9SHR5 N/A
    91 8j70:A (1.85) BS03 SEY ? GO:0003677 ... Q13342 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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