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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1h0j:A (1.9) BS01 SDS ? GO:0005576 ... P60301 12660250
    2 1h0j:A (1.9) BS02 SDS ? GO:0005576 ... P60301 12660250
    3 1h0j:A (1.9) BS03 SDS ? GO:0005576 ... P60301 12660250
    4 1h0j:B (1.9) BS01 SDS ? GO:0005576 ... P60301 12660250
    5 1h0j:B (1.9) BS02 SDS ? GO:0005576 ... P60301 12660250
    6 1h0j:B (1.9) BS03 SDS ? GO:0005576 ... P60301 12660250
    7 1h0j:C (1.9) BS01 SDS ? GO:0005576 ... P60301 12660250
    8 3b6l:A (2.3) BS01 SDS 3.2.1.17 GO:0003796 ... P00698 18522744
    9 3gp6:A (1.4) BS01 SDS 2.3.1.251 GO:0009245 ... P37001 20826347
    10 3gp6:A (1.4) BS02 SDS 2.3.1.251 GO:0009245 ... P37001 20826347
    11 3gp6:A (1.4) BS03 SDS 2.3.1.251 GO:0009245 ... P37001 20826347
    12 3gp6:A (1.4) BS04 SDS 2.3.1.251 GO:0009245 ... P37001 20826347
    13 3gp6:A (1.4) BS05 SDS 2.3.1.251 GO:0009245 ... P37001 20826347
    14 3qqt:A (1.9) BS01 SDS ? GO:0005576 ... P79073 21808803
    15 3qqt:B (1.9) BS01 SDS ? GO:0005576 ... P79073 21808803
    16 3u90:A (1.9) BS01 SDS ? GO:0005506 ... P02791 22525747 PDBbind: -logKd/Ki=4.62, Kd=24uM
    17 4gny:A (1.6367) BS01 SDS ? GO:0005515 ... P02754 23334914 PDBbind: -logKd/Ki=4.22, Kd=60uM
    18 4ib8:A (2.3) BS01 SDS ? GO:0005515 ... P02754 23784992
    19 4iba:A (2.3) BS01 SDS ? GO:0005515 ... P02754 23784992
    20 4qip:A (2.0) BS01 SDS ? GO:0004864 ... P15494 25517162 PDBbind: -logKd/Ki=5.15, Kd=7uM
    21 4qip:A (2.0) BS02 SDS ? GO:0004864 ... P15494 25517162 PDBbind: -logKd/Ki=5.15, Kd=7uM
    22 7kot:A (1.74) BS01 SDS ? GO:0005515 ... P02754 33421379
    23 7kp5:AA1 (2.4) BS01 SDS ? GO:0005515 ... P02754 33421379
    24 7kp5:AA1 (2.4) BS02 SDS ? GO:0005515 ... P02754 33421379
    25 7kp5:BA1 (2.4) BS01 SDS ? GO:0005515 ... P02754 33421379
    26 7kp5:BA1 (2.4) BS02 SDS ? GO:0005515 ... P02754 33421379
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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