Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bhc:J (2.7) BS01 SCN ? GO:0004867 ... P00974 10089400
    2 1dnu:C (1.85) BS02 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    3 1dnu:C (1.85) BS03 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    4 1dnu:D (1.85) BS02 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    5 1dnu:D (1.85) BS03 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    6 1dnw:C (1.9) BS03 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    7 1dnw:C (1.9) BS05 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    8 1dnw:D (1.9) BS02 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    9 1dnw:D (1.9) BS03 SCN 1.11.2.2 GO:0004601 ... P05164 11705390
    10 1gxw:A (2.18) BS08 SCN 3.4.24.27 GO:0004222 ... P00800 12454500
    11 1lcn:A (1.63) BS01 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    12 1lcn:B (1.63) BS01 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    13 1lcn:B (1.63) BS02 SCN 3.2.1.17 GO:0003796 ... P00698 11418760
    14 1lg6:A (2.2) BS02 SCN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 12056894 BindingDB: Ki=1600000nM
    15 1lok:A (1.2) BS04 SCN 3.4.11.10 GO:0006508 ... Q01693 12176384
    16 2a5v:A (2.2) BS01 SCN 4.2.1.1 GO:0004089 ... P9WPJ9 16321983
    17 2a5v:B (2.2) BS01 SCN 4.2.1.1 GO:0004089 ... P9WPJ9 16321983
    18 2a5v:C (2.2) BS01 SCN 4.2.1.1 GO:0004089 ... P9WPJ9 16321983
    19 2ca2:A (1.9) BS02 SCN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 3151020 BindingDB: Ki=1600000nM
    20 2fam:A (2.0) BS01 SCN ? GO:0005344 ... P02210 8411158
    21 2om1:T (1.97) BS05 SCN ? GO:0005179 ... P01308 18093308
    22 3bxi:A (2.3) BS02 SCN 1.11.1.7 GO:0004601 ... P80025 19167310
    23 3c70:A (1.05) BS01 SCN 4.1.2.47 GO:0009694 ... P52704 18524775
    24 3erh:A (2.4) BS02 SCN 1.11.1.7 GO:0004601 ... A5JUY8 19339248
    25 3eri:A (2.5) BS02 SCN 1.11.1.7 GO:0004601 ... P80025 19339248
    26 3faq:A (2.7) BS02 SCN 1.11.1.7 GO:0004601 ... A5JUY8 19339248
    27 3ucm:B (2.513) BS02 SCN 4.2.1.1 GO:0004089 ... Q96554 22162771
    28 3ucm:B (2.513) BS03 SCN 4.2.1.1 GO:0004089 ... Q96554 22162771
    29 4vhb:A (1.8) BS01 SCN ? GO:0005344 ... P04252 10448042
    30 4vhb:B (1.8) BS01 SCN ? GO:0005344 ... P04252 10448042
    31 5a13:A (1.75) BS02 SCN 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    32 5a13:B (1.75) BS02 SCN 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    33 5a13:C (1.75) BS02 SCN 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    34 5a13:D (1.75) BS02 SCN 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    35 5a13:E (1.75) BS02 SCN 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    36 5a13:F (1.75) BS02 SCN 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    37 5a13:G (1.75) BS02 SCN 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    38 5a13:I (1.75) BS02 SCN 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    39 5a13:J (1.75) BS02 SCN 1.13.11.49 GO:0016491 ... A0A0M3KL47 26287794
    40 6d2j:A (2.1) BS02 SCN 4.2.1.1 GO:0004089 ... Q9HVB9 30088334
    41 6ebx:B (1.7) BS01 SCN ? GO:0005576 ... Q90VW1 1418823
    42 6kfb:A (1.55) BS01 SCN ? GO:0016829 ... A0A0H5BR52 32679618
    43 7de5:A (1.55) BS02 SCN 1.11.1.7 GO:0004601 ... L8ICE9 33389415
    44 7de5:A (1.55) BS03 SCN 1.11.1.7 GO:0004601 ... L8ICE9 33389415
    45 7de5:A (1.55) BS05 SCN 1.11.1.7 GO:0004601 ... L8ICE9 33389415
    46 7oih:A (2.603) BS04 SCN 1.11.2.2 GO:0004601 ... P05164 36048150
    47 7oih:B (2.603) BS04 SCN 1.11.2.2 GO:0004601 ... P05164 36048150
    48 7oih:C (2.603) BS04 SCN 1.11.2.2 GO:0004601 ... P05164 36048150
    49 7oih:D (2.603) BS02 SCN 1.11.2.2 GO:0004601 ... P05164 36048150
    50 7oih:D (2.603) BS05 SCN 1.11.2.2 GO:0004601 ... P05164 36048150
    51 7oih:G (2.603) BS04 SCN 1.11.2.2 GO:0004601 ... P05164 36048150
    52 7oih:H (2.603) BS04 SCN 1.11.2.2 GO:0004601 ... P05164 36048150
    53 8ogd:A (1.75) BS02 SCN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 37068394
    54 8oge:A (1.46) BS03 SCN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 37068394

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218