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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3arv:A (1.5) BS01 SAU 3.2.1.14 GO:0004553 ... Q9AMP1 21531720 PDBbind: -logKd/Ki=5.64, Kd=2.3uM
    2 3arv:A (1.5) BS02 SAU 3.2.1.14 GO:0004553 ... Q9AMP1 21531720 PDBbind: -logKd/Ki=5.64, Kd=2.3uM
    3 3as0:A (2.0) BS01 SAU 3.2.1.14 GO:0004553 ... Q9AMP1 21531720 PDBbind: -logKd/Ki=4.55, Kd=28uM
    4 3as0:A (2.0) BS02 SAU 3.2.1.14 GO:0004553 ... Q9AMP1 21531720 PDBbind: -logKd/Ki=4.55, Kd=28uM
    5 5icf:A (1.8) BS02 SAU 2.1.1.128 GO:0008168 ... Q5C9L7 27232113
    6 5zbz:A (1.3086) BS01 SAU 3.6.4.13 GO:0003676 ... P60842 31402318 MOAD: Kd=12.5uM
    PDBbind: -logKd/Ki=4.95, Kd=11.1uM
    7 7c6q:A (2.76) BS02 SAU ? GO:0003677 ... Q07869 34641558
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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