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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aj0:A (2.0) BS02 SAN 2.5.1.15 GO:0004156 ... P0AC13 9187658
    2 4coq:A (1.55) BS02 SAN 4.2.1.1 GO:0004089 ... E8T502 25286845
    3 4coq:B (1.55) BS02 SAN 4.2.1.1 GO:0004089 ... E8T502 25286845
    4 4f92:B (2.662) BS01 SAN 3.6.4.13 GO:0003676 ... O75643 23045696
    5 4f93:B (2.92) BS03 SAN 3.6.4.13 GO:0003676 ... O75643 23045696
    6 6rl9:A (1.0) BS02 SAN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853 BindingDB: Ki=240nM, IC50=628nM, Kd=5550nM
    7 6rl9:A (1.0) BS03 SAN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853 BindingDB: Ki=240nM, IC50=628nM, Kd=5550nM
    8 6rl9:A (1.0) BS04 SAN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853 BindingDB: Ki=240nM, IC50=628nM, Kd=5550nM
    9 8bcb:B (2.38) BS01 SAN 3.6.4.13 GO:0003676 ... O75643 36974964
    10 8bcb:B (2.38) BS02 SAN 3.6.4.13 GO:0003676 ... O75643 36974964
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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