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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1z3c:A (2.2) BS01 SA8 2.1.1.56 GO:0003723 ... Q8SR66 15760890 MOAD: ic50=100uM
    PDBbind: -logKd/Ki=4.00, IC50=100uM
    2 2c4t:A (2.3) BS01 SA8 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    3 2c4t:A (2.3) BS02 SA8 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    4 2c4t:B (2.3) BS01 SA8 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    5 2c4t:B (2.3) BS02 SA8 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    6 2c4t:C (2.3) BS01 SA8 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    7 2c4t:C (2.3) BS02 SA8 2.5.1.63 GO:0016740 ... Q70GK9 N/A
    8 2h2e:A (2.6) BS01 SA8 2.1.1.127
    2.1.1.259    		 GO:0009507 ... Q43088 16682405 PDBbind: -logKd/Ki=3.00, Kd>1000uM
    9 2h2e:B (2.6) BS01 SA8 2.1.1.127
    2.1.1.259    		 GO:0009507 ... Q43088 16682405
    10 2h2e:C (2.6) BS01 SA8 2.1.1.127
    2.1.1.259    		 GO:0009507 ... Q43088 16682405
    11 4gol:D (2.57) BS01 SA8 2.1.1.72 GO:0003676 ... P0AEE8 N/A
    12 4gol:E (2.57) BS01 SA8 2.1.1.72 GO:0003676 ... P0AEE8 N/A
    13 4gol:F (2.57) BS01 SA8 2.1.1.72 GO:0003676 ... P0AEE8 N/A
    14 6wtf:A (2.19) BS03 SA8 ? GO:0003824 ... E4N8S5 33462497
    15 6wtf:B (2.19) BS03 SA8 ? GO:0003824 ... E4N8S5 33462497
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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