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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2fak:2 (2.8) BS01 SA1 3.4.25.1 GO:0000502 ... P38624 16608349
    2 2fak:H (2.8) BS01 SA1 3.4.25.1 GO:0004298 ... P25043 16608349
    3 2fak:K (2.8) BS01 SA1 3.4.25.1 GO:0004298 ... P30656 16608349
    4 2fak:N (2.8) BS01 SA1 3.4.25.1 GO:0000502 ... P38624 16608349
    5 2fak:V (2.8) BS01 SA1 3.4.25.1 GO:0004298 ... P25043 16608349
    6 2fak:Y (2.8) BS01 SA1 3.4.25.1 GO:0004298 ... P30656 16608349
    7 3gpw:2 (2.5) BS01 SA1 3.4.25.1 GO:0000502 ... P38624 19678642
    8 3gpw:H (2.5) BS01 SA1 3.4.25.1 GO:0004298 ... P25043 19678642
    9 3gpw:K (2.5) BS01 SA1 3.4.25.1 GO:0004298 ... P30656 19678642
    10 3gpw:N (2.5) BS01 SA1 3.4.25.1 GO:0000502 ... P38624 19678642
    11 3gpw:V (2.5) BS01 SA1 3.4.25.1 GO:0004298 ... P25043 19678642
    12 3gpw:Y (2.5) BS01 SA1 3.4.25.1 GO:0004298 ... P30656 19678642
    13 8oix:H (2.89) BS01 SA1 3.4.25.1 GO:0000502 ... A2E7Z2 N/A
    14 8oix:I (2.89) BS01 SA1 3.4.25.1 GO:0004298 ... A2F2T6 N/A
    15 8oix:V (2.89) BS01 SA1 3.4.25.1 GO:0000502 ... A2E7Z2 N/A
    16 8oix:W (2.89) BS01 SA1 3.4.25.1 GO:0004298 ... A2F2T6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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