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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ybs:A (2.32) BS03 S2G 1.14.11.66
    1.14.11.69    		 N/A O75164 21460794 PDBbind: -logKd/Ki=4.59, IC50=26uM
    BindingDB: IC50=26000nM
    2 2ybs:B (2.32) BS03 S2G 1.14.11.66
    1.14.11.69    		 N/A O75164 21460794 BindingDB: IC50=26000nM
    3 2yde:A (2.28) BS02 S2G 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 21460794 MOAD: ic50=189uM
    PDBbind: -logKd/Ki=3.72, IC50=189uM
    4 5fzd:A (2.05) BS04 S2G 1.14.11.67 N/A Q9UGL1 N/A
    5 6i9n:A (1.361) BS02 S2G 1.14.11.73
    3.4.-.-    		 N/A Q8N371 36450832
    6 6lpu:A (2.923) BS03 S2G 1.1.99.39 GO:0003824 ... Q8N465 33431826
    7 6lpu:B (2.923) BS03 S2G 1.1.99.39 GO:0003824 ... Q8N465 33431826
    8 7yb9:A (1.54) BS03 S2G 1.14.11.16 GO:0018193 ... Q12797 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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