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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4eax:A (2.3) BS01 S12 ? GO:0005102 ... P01139 22649032
    2 4eax:B (2.3) BS01 S12 ? GO:0005102 ... P01139 22649032
    3 4eax:D (2.3) BS01 S12 ? GO:0005102 ... P01139 22649032
    4 6tt7:T (3.5) BS01 S12 ? GO:0015078 ... W5PF18 32929284
    5 6za9:T (3.76) BS01 S12 ? GO:0015078 ... W5PF18 32929284
    6 8iuf:4D (2.81) BS01 S12 N/A N/A N/A 38388527
    7 8iuf:4F (2.81) BS01 S12 N/A N/A N/A 38388527
    8 8iuj:4D (3.06) BS01 S12 N/A N/A N/A 38388527
    9 8iuj:4F (3.06) BS01 S12 N/A N/A N/A 38388527
    10 8iuj:4d (3.06) BS01 S12 N/A N/A N/A 38388527
    11 8iuj:4f (3.06) BS01 S12 N/A N/A N/A 38388527
    12 8iuj:C1 (3.06) BS05 S12 7.1.1.9 GO:0004129 ... Q34463 38388527
    13 8sai:A (3.27) BS01 S12 ? GO:0004930 ... Q9UPC5 37733739
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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