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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rcx:B (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    2 1rcx:B (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    3 1rcx:E (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    4 1rcx:E (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    5 1rcx:H (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    6 1rcx:H (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    7 1rcx:K (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    8 1rcx:K (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    9 1rcx:L (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    10 1rcx:L (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    11 1rcx:O (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    12 1rcx:O (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    13 1rcx:R (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    14 1rcx:R (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    15 1rcx:V (2.4) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    16 1rcx:V (2.4) BS02 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    17 1rxo:B (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    18 1rxo:E (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    19 1rxo:H (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    20 1rxo:L (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P00875 9034362
    21 3a9c:A (2.6) BS01 RUB 5.3.1.29 GO:0016853 ... Q5JFM9 22511789
    22 3a9c:B (2.6) BS01 RUB 5.3.1.29 GO:0016853 ... Q5JFM9 22511789
    23 3a9c:C (2.6) BS01 RUB 5.3.1.29 GO:0016853 ... Q5JFM9 22511789
    24 3a9c:D (2.6) BS01 RUB 5.3.1.29 GO:0016853 ... Q5JFM9 22511789
    25 3a9c:E (2.6) BS01 RUB 5.3.1.29 GO:0016853 ... Q5JFM9 22511789
    26 3a9c:F (2.6) BS01 RUB 5.3.1.29 GO:0016853 ... Q5JFM9 22511789
    27 3zuh:A (21.0) BS01 RUB ? GO:0005524 ... P95648 22048315
    28 3zuh:B (21.0) BS01 RUB ? GO:0005524 ... P95648 22048315
    29 3zuh:C (21.0) BS01 RUB ? GO:0005524 ... P95648 22048315
    30 3zuh:D (21.0) BS01 RUB ? GO:0005524 ... P95648 22048315
    31 3zuh:E (21.0) BS01 RUB ? GO:0005524 ... P95648 22048315
    32 3zuh:F (21.0) BS01 RUB ? GO:0005524 ... P95648 22048315
    33 4hhh:A (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P04717 23295478
    34 4hhh:B (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P04717 23295478
    35 4hhh:C (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P04717 23295478
    36 4hhh:D (2.2) BS01 RUB 4.1.1.39 GO:0000287 ... P04717 23295478
    37 4mkv:A (2.15) BS01 RUB 4.1.1.39 GO:0000287 ... P04717 26197050
    38 4mkv:B (2.15) BS01 RUB 4.1.1.39 GO:0000287 ... P04717 26197050
    39 4mkv:C (2.15) BS01 RUB 4.1.1.39 GO:0000287 ... P04717 26197050
    40 4mkv:D (2.15) BS01 RUB 4.1.1.39 GO:0000287 ... P04717 26197050
    41 5yfj:A (2.2) BS01 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    42 5yfj:B (2.2) BS01 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    43 5yfj:C (2.2) BS01 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    44 5yfu:A (2.35) BS01 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    45 5yfu:B (2.35) BS02 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    46 5yfu:C (2.35) BS02 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    47 5yg5:A (2.75) BS01 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    48 5yg5:B (2.75) BS01 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    49 5yg5:C (2.75) BS02 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    50 5yg8:A (2.8) BS01 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    51 5yg8:B (2.8) BS02 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    52 5yg8:C (2.8) BS02 RUB 5.3.1.29 GO:0016853 ... O57947 29382938
    53 5z49:A (2.148) BS01 RUB ? N/A Q9F1R2 30084400
    54 5z49:B (2.148) BS01 RUB ? N/A Q9F1R2 30084400
    55 8thm:A (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    56 8thm:B (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    57 8thm:C (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    58 8thm:D (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    59 8thm:E (2.3) BS02 RUB 4.2.1.1 N/A B5ILN4 38728392
    60 8thm:F (2.3) BS03 RUB 4.2.1.1 N/A B5ILN4 38728392
    61 8uhi:A (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    62 8uhi:B (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    63 8uhi:C (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    64 8uhi:D (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    65 8uhi:E (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    66 8uhi:F (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    67 8uhi:G (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    68 8uhi:H (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    69 9rub:A (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    70 9rub:B (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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