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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a7c:A (1.95) BS03 RIP ? GO:0001525 ... P05121 9634700
    2 1dbp:A (2.2) BS01 RIP ? GO:0005515 ... P02925 8157648
    3 1drj:A (2.5) BS01 RIP ? GO:0005515 ... P02925 7982928 MOAD: Kd=0.04uM
    PDBbind: -logKd/Ki=7.40, Kd=0.040uM
    4 1drk:A (2.0) BS01 RIP ? GO:0005515 ... P02925 7982928 MOAD: Kd=0.15uM
    PDBbind: -logKd/Ki=6.82, Kd=0.15uM
    5 1ogd:A (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    6 1ogd:B (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    7 1ogd:C (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    8 1ogd:D (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    9 1ogd:E (1.95) BS01 RIP 5.4.99.62 GO:0005737 ... P36946 12738765 MOAD: Kd=0.93mM
    10 1y7p:A (1.9) BS01 RIP ? N/A O28869 N/A
    11 1y7p:A (1.9) BS02 RIP ? N/A O28869 N/A
    12 1y7p:B (1.9) BS01 RIP ? N/A O28869 N/A
    13 1y7p:C (1.9) BS01 RIP ? N/A O28869 N/A
    14 1y7p:C (1.9) BS02 RIP ? N/A O28869 N/A
    15 2dri:A (1.6) BS01 RIP ? GO:0005515 ... P02925 7982928 MOAD: Kd=0.13uM
    PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    16 2fn8:A (2.15) BS01 RIP ? GO:0030246 ... Q9X053 19019243
    17 2gx6:A (1.97) BS01 RIP 3.6.3.17 GO:0005515 ... P02925 N/A
    18 2ioy:A (1.9) BS01 RIP ? GO:0030246 ... Q8RD41 18373848
    19 2ioy:B (1.9) BS01 RIP ? GO:0030246 ... Q8RD41 18373848
    20 2px1:A (2.5) BS01 RIP 3.4.21.- GO:0005576 ... P24627 N/A
    21 2px1:A (2.5) BS02 RIP 3.4.21.- GO:0005576 ... P24627 N/A
    22 3n1d:A (1.7) BS01 RIP N/A GO:0017148 ... N/A N/A
    23 3p13:A (2.35) BS01 RIP 5.4.99.62 GO:0005737 ... Q2G1A5 21276853
    24 3p13:B (2.35) BS01 RIP 5.4.99.62 GO:0005737 ... Q2G1A5 21276853
    25 3p13:C (2.35) BS01 RIP 5.4.99.62 GO:0005737 ... Q2G1A5 21276853
    26 3p13:D (2.35) BS01 RIP 5.4.99.62 GO:0005737 ... Q2G1A5 21276853
    27 3sj6:A (1.6) BS01 RIP 3.2.2.22 GO:0000166 ... D9J2T9 22361570
    28 4ry0:A (1.4) BS01 RIP ? GO:0030246 ... Q2JZQ5 N/A
    29 4zjp:A (1.63) BS01 RIP 3.6.3.17 GO:0016787 ... A6VKT0 N/A
    30 6em7:A (1.238) BS03 RIP 2.7.11.11 GO:0000287 ... P25321 N/A
    31 6esa:A (1.307) BS03 RIP 2.7.11.11 GO:0000287 ... P25321 N/A
    32 6qrn:A (1.4) BS01 RIP ? GO:0002667 ... Q05315 31123109
    33 6x8y:A (1.0) BS01 RIP ? N/A A1YIY3 33824212
    34 7e7m:A (2.85) BS01 RIP ? GO:0030246 ... Q8E283 N/A
    35 7e7m:B (2.85) BS01 RIP ? GO:0030246 ... Q8E283 N/A
    36 7e7m:C (2.85) BS01 RIP ? GO:0030246 ... Q8E283 N/A
    37 7e7m:D (2.85) BS01 RIP ? GO:0030246 ... Q8E283 N/A
    38 8wl9:A (1.93) BS01 RIP ? GO:0030246 ... A0A9W3L9M6 37820454
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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