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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jcy:A (1.9) BS01 R5P 2.5.1.55 GO:0005737 ... O66496 11747443
    2 1u9z:A (2.8) BS01 R5P 2.7.6.1 GO:0000287 ... Q58761 16288921
    3 1u9z:B (2.8) BS01 R5P 2.7.6.1 GO:0000287 ... Q58761 16288921
    4 1u9z:C (2.8) BS01 R5P 2.7.6.1 GO:0000287 ... Q58761 16288921
    5 1u9z:D (2.8) BS02 R5P 2.7.6.1 GO:0000287 ... Q58761 16288921
    6 1v8t:A (2.6) BS01 R5P 3.6.1.13 GO:0000166 ... Q84CU3 15210687
    7 1zha:A (1.74) BS01 R5P 2.5.1.55 GO:0005737 ... O66496 16156656
    8 1zji:A (2.25) BS01 R5P 2.5.1.55 GO:0005737 ... O66496 16156656
    9 2r5n:A (1.6) BS01 R5P 2.2.1.1 GO:0000287 ... P27302 17914867 MOAD: Kd=700uM
    10 2r5n:B (1.6) BS01 R5P 2.2.1.1 GO:0000287 ... P27302 17914867
    11 3glc:A (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    12 3glc:B (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    13 3glc:C (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    14 3glc:D (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    15 3glc:E (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    16 3glc:F (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    17 3glc:G (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    18 3glc:H (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    19 3glc:I (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    20 3glc:J (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    21 3glc:K (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    22 3glc:L (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    23 3glc:M (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    24 3glc:N (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    25 3glc:O (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    26 3glc:P (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    27 3glc:Q (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    28 3glc:R (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    29 3glc:S (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    30 3glc:T (2.5) BS01 R5P 2.3.1.245 GO:0003824 ... P76143 19714241
    31 3hee:A (2.0) BS01 R5P 5.3.1.6 GO:0004751 ... A3DIL8 21253719
    32 3hee:A (2.0) BS02 R5P 5.3.1.6 GO:0004751 ... A3DIL8 21253719
    33 3hee:B (2.0) BS01 R5P 5.3.1.6 GO:0004751 ... A3DIL8 21253719
    34 3hee:B (2.0) BS02 R5P 5.3.1.6 GO:0004751 ... A3DIL8 21253719
    35 3m6l:A (1.59) BS03 R5P 2.2.1.1 GO:0003824 ... Q0P7Y3 N/A
    36 3uw1:A (1.71) BS01 R5P 5.3.1.6 GO:0004751 ... Q2SVL4 23382856
    37 4adu:A (2.44) BS01 R5P N/A GO:0042819 ... N/A 22244765
    38 4adu:B (2.44) BS01 R5P N/A GO:0042819 ... N/A 22244765
    39 4fir:A (3.1) BS01 R5P 4.3.3.6 GO:0006520 ... O59080 23104439
    40 4fir:B (3.1) BS01 R5P 4.3.3.6 GO:0006520 ... O59080 23104439
    41 4fir:C (3.1) BS01 R5P 4.3.3.6 GO:0006520 ... O59080 23104439
    42 4fir:D (3.1) BS01 R5P 4.3.3.6 GO:0006520 ... O59080 23104439
    43 4fir:E (3.1) BS01 R5P 4.3.3.6 GO:0006520 ... O59080 23104439
    44 4fir:F (3.1) BS01 R5P 4.3.3.6 GO:0006520 ... O59080 23104439
    45 4gik:A (2.187) BS01 R5P 4.2.1.70 GO:0001522 ... P33025 23066817
    46 4gik:B (2.187) BS01 R5P 4.2.1.70 GO:0001522 ... P33025 23066817
    47 4gik:C (2.187) BS01 R5P 4.2.1.70 GO:0001522 ... P33025 23066817
    48 4wy0:B (2.3) BS01 R5P 4.3.3.6 GO:0006520 ... Q5L3Y2 25568319
    49 4wy0:D (2.3) BS01 R5P 4.3.3.6 GO:0006520 ... Q5L3Y2 25568319
    50 4wy0:E (2.3) BS01 R5P 4.3.3.6 GO:0006520 ... Q5L3Y2 25568319
    51 4wy0:G (2.3) BS01 R5P 4.3.3.6 GO:0006520 ... Q5L3Y2 25568319
    52 4wy0:I (2.3) BS01 R5P 4.3.3.6 GO:0006520 ... Q5L3Y2 25568319
    53 4wy0:J (2.3) BS01 R5P 4.3.3.6 GO:0006520 ... Q5L3Y2 25568319
    54 4wy0:K (2.3) BS01 R5P 4.3.3.6 GO:0006520 ... Q5L3Y2 25568319
    55 6ito:A (2.55) BS03 R5P 2.7.1.40 GO:0000287 ... P9WKE5 31381898
    56 6ito:B (2.55) BS03 R5P 2.7.1.40 GO:0000287 ... P9WKE5 31381898
    57 6ito:C (2.55) BS03 R5P 2.7.1.40 GO:0000287 ... P9WKE5 31381898
    58 6ito:D (2.55) BS03 R5P 2.7.1.40 GO:0000287 ... P9WKE5 31381898
    59 6mc0:A (2.0) BS01 R5P 5.3.1.6 GO:0004751 ... Q5ZZB7 N/A
    60 7uf1:A (1.95) BS02 R5P 4.1.99.12 GO:0000287 ... Q9KKP2 35802469
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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