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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4e9a:A (1.662) BS02 QAP 3.5.1.88 GO:0006412 ... Q672W7 N/A
    2 4gq0:A (2.1) BS01 QAP 1.1.1.300
    1.1.1.54    		 GO:0001523 ... O60218 N/A BindingDB: IC50=80nM, Ki=46nM
    3 4qrf:A (1.8) BS01 QAP ? N/A P02766 25314129 BindingDB: EC50=8600nM
    4 4qrf:B (1.8) BS01 QAP ? N/A P02766 25314129 BindingDB: EC50=8600nM
    5 5hnt:A (2.0) BS02 QAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 N/A BindingDB: IC50=1700nM
    6 5hnt:C (2.0) BS02 QAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 N/A BindingDB: IC50=1700nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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