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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6cq8:A (3.0) BS03 Q6F ? GO:0005267 ... P97438 28693035
    2 6cq8:B (3.0) BS05 Q6F ? GO:0005267 ... P97438 28693035
    3 6v37:A (2.8) BS01 Q6F ? GO:0005267 ... P97438 32059793
    4 6v37:B (2.8) BS04 Q6F ? GO:0005267 ... P97438 32059793
    5 6w85:A (3.8) BS03 Q6F ? GO:0005267 ... P97438 33127683
    6 6w85:B (3.8) BS05 Q6F ? GO:0005267 ... P97438 33127683
    7 6w86:A (3.299) BS03 Q6F ? GO:0005267 ... P97438 33127683
    8 6w86:B (3.299) BS05 Q6F ? GO:0005267 ... P97438 33127683
    9 6w87:A (3.2) BS03 Q6F ? GO:0005267 ... P97438 33127683
    10 6w87:B (3.2) BS05 Q6F ? GO:0005267 ... P97438 33127683
    11 6w88:A (3.2) BS01 Q6F ? GO:0005267 ... P97438 33127683
    12 6w88:B (3.2) BS04 Q6F ? GO:0005267 ... P97438 33127683
    13 6w8a:A (3.002) BS03 Q6F ? GO:0005267 ... P97438 33127683
    14 6w8a:B (3.002) BS05 Q6F ? GO:0005267 ... P97438 33127683
    15 6w8c:A (2.6) BS04 Q6F ? GO:0005267 ... P97438 33127683
    16 6w8c:B (2.6) BS08 Q6F ? GO:0005267 ... P97438 33127683
    17 6w8f:A (3.4) BS02 Q6F ? GO:0005267 ... P97438 33127683
    18 6w8f:B (3.4) BS05 Q6F ? GO:0005267 ... P97438 33127683
    19 8ue2:A (3.0) BS01 Q6F N/A N/A P97438 N/A
    20 8ue2:B (3.0) BS01 Q6F N/A N/A P97438 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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