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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1deh:A (2.2) BS04 PYZ 1.1.1.105 GO:0001523 ... P00325 8663387
    2 1deh:B (2.2) BS04 PYZ 1.1.1.105 GO:0001523 ... P00325 8663387
    3 1hdy:A (2.5) BS04 PYZ 1.1.1.105 GO:0001523 ... P00325 8201622
    4 1hdy:B (2.5) BS04 PYZ 1.1.1.105 GO:0001523 ... P00325 8201622
    5 1hso:A (2.5) BS04 PYZ 1.1.1.1 GO:0004022 ... P07327 11274460
    6 1hso:B (2.5) BS04 PYZ 1.1.1.1 GO:0004022 ... P07327 11274460
    7 1htb:A (2.4) BS04 PYZ 1.1.1.105 GO:0001523 ... P00325 8663387
    8 1htb:B (2.4) BS04 PYZ 1.1.1.105 GO:0001523 ... P00325 8663387
    9 1ml7:A (1.25) BS02 PYZ 1.7.6.1 GO:0005576 ... Q94734 14673714
    10 1ml7:A (1.25) BS03 PYZ 1.7.6.1 GO:0005576 ... Q94734 14673714
    11 1n4g:A (1.8) BS02 PYZ 1.14.19.70 GO:0004497 ... P9WPP7 12435731
    12 1n92:A (1.47) BS04 PYZ 1.1.1.1 GO:0004022 ... P00327 12627956
    13 1n92:B (1.47) BS04 PYZ 1.1.1.1 GO:0004022 ... P00327 12627956
    14 5cw1:A (1.45) BS01 PYZ 3.4.21.64 GO:0004252 ... P06873 N/A
    15 5cw1:A (1.45) BS02 PYZ 3.4.21.64 GO:0004252 ... P06873 N/A
    16 5cw1:A (1.45) BS03 PYZ 3.4.21.64 GO:0004252 ... P06873 N/A
    17 5cym:A (2.1) BS02 PYZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 N/A
    18 5cym:B (2.1) BS01 PYZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 N/A
    19 5cym:B (2.1) BS02 PYZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 N/A
    20 5cym:B (2.1) BS03 PYZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 N/A
    21 5cym:B (2.1) BS04 PYZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 N/A
    22 6q3b:A (1.11) BS01 PYZ 2.7.11.22 GO:0000082 ... P24941 30860382
    23 6q3b:A (1.11) BS02 PYZ 2.7.11.22 GO:0000082 ... P24941 30860382
    24 7ooh:A () BS02 PYZ ? N/A N/A N/A
    25 7ooh:B () BS02 PYZ ? N/A N/A N/A
    26 7p31:A (2.36) BS02 PYZ ? GO:0005524 ... K7NTP5 34341192
    27 7p31:B (2.36) BS02 PYZ ? GO:0005524 ... K7NTP5 34341192
    28 7qum:AAA (1.5) BS01 PYZ 3.6.1.- N/A Q6PL18 36367089
    29 7z9y:AAA (1.04) BS01 PYZ ? N/A O60885 36367089
    30 7z9y:AAA (1.04) BS02 PYZ ? N/A O60885 36367089
    31 8dxl:A (2.25) BS03 PYZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    32 8dxl:A (2.25) BS04 PYZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    33 8dxl:B (2.25) BS01 PYZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 37115705
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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