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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3nef:A (2.4) BS01 PYV 3.1.3.16 GO:0004864 ... Q8VZS8 20554531 PDBbind: -logKd/Ki=5.94, IC50=1.14uM
    2 3neg:A (2.801) BS01 PYV 3.1.3.16 GO:0004864 ... Q8VZS8 20554531 PDBbind: -logKd/Ki=5.94, IC50=1.14uM
    3 3neg:B (2.801) BS01 PYV 3.1.3.16 GO:0004864 ... Q8VZS8 20554531
    4 3nj0:A (1.89) BS01 PYV ? GO:0004864 ... O80992 20729860
    5 3nj0:B (1.89) BS01 PYV ? GO:0004864 ... O80992 20729860
    6 3nj0:C (1.89) BS01 PYV ? GO:0004864 ... O80992 20729860
    7 3nj1:A (1.948) BS01 PYV ? GO:0004864 ... O80992 20729860
    8 3njo:A (2.473) BS01 PYV ? GO:0004864 ... O49686 20729860
    9 3njo:C (2.473) BS01 PYV ? GO:0004864 ... O49686 20729860
    10 3nmh:A (1.85) BS01 PYV ? GO:0004864 ... O80992 20729862
    11 3nmh:B (1.85) BS01 PYV ? GO:0004864 ... O80992 20729862
    12 3nmh:C (1.85) BS01 PYV ? GO:0004864 ... O80992 20729862
    13 3nmn:A (2.15) BS01 PYV ? N/A Q8VZS8 20729862
    14 3nmn:C (2.15) BS01 PYV ? N/A Q8VZS8 20729862
    15 3nmp:A (2.1) BS01 PYV ? GO:0004864 ... O80992 20729862
    16 3nmp:B (2.1) BS01 PYV ? GO:0004864 ... O80992 20729862
    17 3nmp:C (2.1) BS01 PYV ? GO:0004864 ... O80992 20729862
    18 3nmt:A (2.56) BS01 PYV ? GO:0004864 ... O80992 20729862
    19 3nmv:A (2.1) BS01 PYV ? GO:0004864 ... O80992 20729862
    20 3nr4:A (2.006) BS01 PYV ? GO:0004864 ... O80992 20630864
    21 3nr4:B (2.006) BS01 PYV ? GO:0004864 ... O80992 20630864
    22 3nr4:C (2.006) BS01 PYV ? GO:0004864 ... O80992 20630864
    23 3ns2:A (1.634) BS01 PYV ? GO:0004864 ... O80992 20630864
    24 3ns2:B (1.634) BS01 PYV ? GO:0004864 ... O80992 20630864
    25 3ns2:C (1.634) BS01 PYV ? GO:0004864 ... O80992 20630864
    26 3oji:A (1.84) BS01 PYV ? GO:0004864 ... Q9SSM7 22579247
    27 3oji:B (1.84) BS01 PYV ? GO:0004864 ... Q9SSM7 22579247
    28 5ur4:A (1.52) BS01 PYV ? GO:0004864 ... O49686 N/A
    29 5zcu:C (2.413) BS01 PYV ? N/A Q6EN42 30941543 MOAD: ic50=2160nM
    PDBbind: -logKd/Ki=5.67, IC50=2160nM
    30 5zcu:D (2.413) BS01 PYV ? N/A Q6EN42 30941543 MOAD: ic50=2160nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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