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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b9i:A (2.0) BS01 PXG 2.6.1.-
    4.2.1.144    		 GO:0000271 ... O52552 10433690
    2 3fq7:A (2.15) BS01 PXG 5.4.3.8 GO:0005737 ... P24630 19786580 PDBbind: -logKd/Ki=2.52, IC50=3mM
    3 3fq7:A (2.15) BS02 PXG 5.4.3.8 GO:0005737 ... P24630 19786580 PDBbind: -logKd/Ki=2.52, IC50=3mM
    4 3fq7:B (2.15) BS01 PXG 5.4.3.8 GO:0005737 ... P24630 19786580 PDBbind: -logKd/Ki=2.52, IC50=3mM
    5 3fq7:B (2.15) BS02 PXG 5.4.3.8 GO:0005737 ... P24630 19786580 PDBbind: -logKd/Ki=2.52, IC50=3mM
    6 3zrr:A (1.99) BS01 PXG 2.6.1.51 GO:0004760 ... Q97VM5 22751661
    7 3zrr:A (1.99) BS02 PXG 2.6.1.51 GO:0004760 ... Q97VM5 22751661
    8 3zrr:B (1.99) BS01 PXG 2.6.1.51 GO:0004760 ... Q97VM5 22751661
    9 3zrr:B (1.99) BS02 PXG 2.6.1.51 GO:0004760 ... Q97VM5 22751661
    10 4b98:A (1.65) BS01 PXG 2.6.1.18 GO:0004015 ... Q9I700 23519665
    11 4b98:A (1.65) BS03 PXG 2.6.1.18 GO:0004015 ... Q9I700 23519665
    12 4b98:B (1.65) BS01 PXG 2.6.1.18 GO:0004015 ... Q9I700 23519665
    13 4b98:B (1.65) BS02 PXG 2.6.1.18 GO:0004015 ... Q9I700 23519665
    14 4b98:C (1.65) BS01 PXG 2.6.1.18 GO:0004015 ... Q9I700 23519665
    15 4b98:C (1.65) BS03 PXG 2.6.1.18 GO:0004015 ... Q9I700 23519665
    16 4b98:D (1.65) BS01 PXG 2.6.1.18 GO:0004015 ... Q9I700 23519665
    17 4b98:D (1.65) BS02 PXG 2.6.1.18 GO:0004015 ... Q9I700 23519665
    18 4ba5:A (1.76) BS01 PXG 2.6.1.18 GO:0004015 ... Q7NWG4 23519665
    19 4ba5:B (1.76) BS01 PXG 2.6.1.18 GO:0004015 ... Q7NWG4 23519665
    20 4cmf:A (1.5) BS01 PXG 2.6.1.42 GO:0003824 ... C7YVL8 24618038
    21 4jev:A (1.67) BS01 PXG 2.6.1.11
    2.6.1.17    		 GO:0003992 ... P40732 N/A
    22 4jev:B (1.67) BS01 PXG 2.6.1.11
    2.6.1.17    		 GO:0003992 ... P40732 N/A
    23 4uug:A (1.6) BS01 PXG 2.6.1.- GO:0003824 ... Q4WH08 25400251
    24 4uug:B (1.6) BS01 PXG 2.6.1.- GO:0003824 ... Q4WH08 25400251
    25 5dj9:A (1.55) BS01 PXG 2.6.1.13 GO:0004587 ... S8EY38 N/A
    26 5dj9:A (1.55) BS02 PXG 2.6.1.13 GO:0004587 ... S8EY38 N/A
    27 5dj9:B (1.55) BS01 PXG 2.6.1.13 GO:0004587 ... S8EY38 N/A
    28 5dj9:B (1.55) BS02 PXG 2.6.1.13 GO:0004587 ... S8EY38 N/A
    29 5mr0:A (1.98) BS01 PXG 2.6.1.42 GO:0003824 ... O29329 30733943
    30 5mr0:B (1.98) BS01 PXG 2.6.1.42 GO:0003824 ... O29329 30733943
    31 5mr0:C (1.98) BS01 PXG 2.6.1.42 GO:0003824 ... O29329 30733943
    32 5mr0:D (1.98) BS01 PXG 2.6.1.42 GO:0003824 ... O29329 30733943
    33 5mr0:D (1.98) BS02 PXG 2.6.1.42 GO:0003824 ... O29329 30733943
    34 5mr0:E (1.98) BS01 PXG 2.6.1.42 GO:0003824 ... O29329 30733943
    35 5mr0:F (1.98) BS01 PXG 2.6.1.42 GO:0003824 ... O29329 30733943
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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