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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 941 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 7ezx:wL (3.0) BS09 PUB ? N/A A0A5J4YZM7 N/A
    602 7ezx:wL (3.0) BS10 PUB ? N/A A0A5J4YZM7 N/A
    603 7ezx:xJ (3.0) BS05 PUB ? N/A A0A5J4YZM7 N/A
    604 7ezx:xJ (3.0) BS09 PUB ? N/A A0A5J4YZM7 N/A
    605 7ezx:xJ (3.0) BS10 PUB ? N/A A0A5J4YZM7 N/A
    606 7ezx:xL (3.0) BS09 PUB ? N/A A0A5J4YZM7 N/A
    607 7ezx:xL (3.0) BS10 PUB ? N/A A0A5J4YZM7 N/A
    608 7ezx:yJ (3.0) BS07 PUB ? N/A A0A5J4YZH3 N/A
    609 7ezx:yJ (3.0) BS08 PUB ? N/A A0A5J4YZH3 N/A
    610 7ezx:yL (3.0) BS07 PUB ? N/A A0A5J4YZH3 N/A
    611 7ezx:yL (3.0) BS08 PUB ? N/A A0A5J4YZH3 N/A
    612 7y4l:A2 (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    613 7y4l:A2 (3.3) BS04 PUB ? N/A A0A5J4YX19 36922595
    614 7y4l:A4 (3.3) BS03 PUB ? N/A A0A5J4YZM7 36922595
    615 7y4l:A4 (3.3) BS04 PUB ? N/A A0A5J4YZM7 36922595
    616 7y4l:A4 (3.3) BS05 PUB ? N/A A0A5J4YZM7 36922595
    617 7y4l:A5 (3.3) BS01 PUB ? N/A A0A5J4YX19 36922595
    618 7y4l:A5 (3.3) BS08 PUB ? N/A A0A5J4YX19 36922595
    619 7y4l:A6 (3.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    620 7y4l:A6 (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    621 7y4l:A9 (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    622 7y4l:AB (3.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    623 7y4l:AB (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    624 7y4l:AC (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    625 7y4l:AC (3.3) BS04 PUB ? N/A A0A5J4YX19 36922595
    626 7y4l:AD (3.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    627 7y4l:AD (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    628 7y4l:AE (3.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    629 7y4l:AE (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    630 7y4l:AH (3.3) BS03 PUB ? N/A A0A5J4YZM7 36922595
    631 7y4l:AH (3.3) BS04 PUB ? N/A A0A5J4YZM7 36922595
    632 7y4l:AH (3.3) BS05 PUB ? N/A A0A5J4YZM7 36922595
    633 7y4l:AJ (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    634 7y4l:AJ (3.3) BS05 PUB ? N/A A0A5J4YX19 36922595
    635 7y4l:B4 (3.3) BS02 PUB ? N/A A0A5J4YZH3 36922595
    636 7y4l:B4 (3.3) BS06 PUB ? N/A A0A5J4YZH3 36922595
    637 7y4l:BH (3.3) BS02 PUB ? N/A A0A5J4YZH3 36922595
    638 7y4l:BH (3.3) BS05 PUB ? N/A A0A5J4YZH3 36922595
    639 7y4l:CI (3.3) BS03 PUB ? GO:0009507 ... P11392 36922595
    640 7y4l:I9 (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    641 7y4l:II (3.3) BS03 PUB ? GO:0009507 ... P11392 36922595
    642 7y4l:K1 (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    643 7y4l:KI (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    644 7y4l:KK (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    645 7y4l:M9 (3.3) BS09 PUB ? N/A A0A5J4YNU6 36922595
    646 7y4l:M9 (3.3) BS10 PUB ? N/A A0A5J4YNU6 36922595
    647 7y4l:MI (3.3) BS01 PUB ? N/A A0A5J4YNU6 36922595
    648 7y4l:MI (3.3) BS06 PUB ? N/A A0A5J4YNU6 36922595
    649 7y4l:N5 (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    650 7y4l:N9 (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    651 7y4l:NJ (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    652 7y4l:O4 (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    653 7y4l:O8 (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    654 7y4l:OF (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    655 7y4l:OH (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    656 7y4l:U4 (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    657 7y4l:VI (3.3) BS03 PUB ? GO:0009507 ... P11392 36922595
    658 7y4l:XI (3.3) BS03 PUB ? GO:0009507 ... P11392 36922595
    659 7y4l:Y1 (3.3) BS06 PUB ? N/A A0A5J4YX19 36922595
    660 7y4l:Y1 (3.3) BS11 PUB ? N/A A0A5J4YX19 36922595
    661 7y4l:Y8 (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    662 7y4l:YF (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    663 7y4l:YK (3.3) BS06 PUB ? N/A A0A5J4YX19 36922595
    664 7y4l:YK (3.3) BS11 PUB ? N/A A0A5J4YX19 36922595
    665 7y4l:Z9 (3.3) BS09 PUB ? N/A A0A5J4YNU6 36922595
    666 7y4l:Z9 (3.3) BS10 PUB ? N/A A0A5J4YNU6 36922595
    667 7y4l:ZI (3.3) BS06 PUB ? N/A A0A5J4YNU6 36922595
    668 7y4l:ZI (3.3) BS09 PUB ? N/A A0A5J4YNU6 36922595
    669 7y4l:b2 (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    670 7y4l:bC (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    671 7y4l:fH (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    672 7y4l:j2 (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    673 7y4l:jC (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    674 7y4l:lD (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    675 7y4l:lE (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    676 7y4l:lH (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    677 7y4l:u8 (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    678 7y4l:uF (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    679 7y4l:w8 (3.3) BS10 PUB ? N/A A0A5J4YZM7 36922595
    680 7y4l:w8 (3.3) BS11 PUB ? N/A A0A5J4YZM7 36922595
    681 7y4l:wF (3.3) BS10 PUB ? N/A A0A5J4YZM7 36922595
    682 7y4l:wF (3.3) BS11 PUB ? N/A A0A5J4YZM7 36922595
    683 7y4l:x8 (3.3) BS06 PUB ? N/A A0A5J4YZM7 36922595
    684 7y4l:x8 (3.3) BS10 PUB ? N/A A0A5J4YZM7 36922595
    685 7y4l:x8 (3.3) BS11 PUB ? N/A A0A5J4YZM7 36922595
    686 7y4l:xF (3.3) BS06 PUB ? N/A A0A5J4YZM7 36922595
    687 7y4l:xF (3.3) BS10 PUB ? N/A A0A5J4YZM7 36922595
    688 7y4l:xF (3.3) BS11 PUB ? N/A A0A5J4YZM7 36922595
    689 7y4l:y8 (3.3) BS08 PUB ? N/A A0A5J4YZH3 36922595
    690 7y4l:y8 (3.3) BS09 PUB ? N/A A0A5J4YZH3 36922595
    691 7y4l:yF (3.3) BS08 PUB ? N/A A0A5J4YZH3 36922595
    692 7y4l:yF (3.3) BS09 PUB ? N/A A0A5J4YZH3 36922595
    693 7y5e:A1 (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    694 7y5e:A1 (3.3) BS04 PUB ? N/A A0A5J4YX19 36922595
    695 7y5e:A4 (3.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    696 7y5e:A4 (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    697 7y5e:A5 (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    698 7y5e:AD (3.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    699 7y5e:AD (3.3) BS05 PUB ? N/A A0A5J4YX19 36922595
    700 7y5e:AE (3.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    701 7y5e:AE (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    702 7y5e:AG (3.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    703 7y5e:AG (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    704 7y5e:AH (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    705 7y5e:AH (3.3) BS04 PUB ? N/A A0A5J4YX19 36922595
    706 7y5e:AJ (3.3) BS03 PUB ? N/A A0A5J4YZM7 36922595
    707 7y5e:AJ (3.3) BS04 PUB ? N/A A0A5J4YZM7 36922595
    708 7y5e:AJ (3.3) BS05 PUB ? N/A A0A5J4YZM7 36922595
    709 7y5e:AM (3.3) BS03 PUB ? N/A A0A5J4YZM7 36922595
    710 7y5e:AM (3.3) BS04 PUB ? N/A A0A5J4YZM7 36922595
    711 7y5e:AM (3.3) BS05 PUB ? N/A A0A5J4YZM7 36922595
    712 7y5e:AO (3.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    713 7y5e:AO (3.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    714 7y5e:AQ (3.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    715 7y5e:AQ (3.3) BS05 PUB ? N/A A0A5J4YX19 36922595
    716 7y5e:BJ (3.3) BS02 PUB ? N/A A0A5J4YZH3 36922595
    717 7y5e:BJ (3.3) BS05 PUB ? N/A A0A5J4YZH3 36922595
    718 7y5e:BM (3.3) BS02 PUB ? N/A A0A5J4YZH3 36922595
    719 7y5e:BM (3.3) BS06 PUB ? N/A A0A5J4YZH3 36922595
    720 7y5e:I5 (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    721 7y5e:I9 (3.3) BS03 PUB ? GO:0009507 ... P11392 36922595
    722 7y5e:K7 (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    723 7y5e:K9 (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    724 7y5e:KA (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    725 7y5e:M5 (3.3) BS07 PUB ? N/A A0A5J4YNU6 36922595
    726 7y5e:M5 (3.3) BS08 PUB ? N/A A0A5J4YNU6 36922595
    727 7y5e:M9 (3.3) BS06 PUB ? N/A A0A5J4YNU6 36922595
    728 7y5e:N5 (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    729 7y5e:ND (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    730 7y5e:NQ (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    731 7y5e:OF (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    732 7y5e:OJ (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    733 7y5e:OK (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    734 7y5e:OM (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    735 7y5e:UM (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    736 7y5e:V9 (3.3) BS03 PUB ? GO:0009507 ... P11392 36922595
    737 7y5e:X9 (3.3) BS03 PUB ? GO:0009507 ... P11392 36922595
    738 7y5e:Y7 (3.3) BS06 PUB ? N/A A0A5J4YX19 36922595
    739 7y5e:Y7 (3.3) BS09 PUB ? N/A A0A5J4YX19 36922595
    740 7y5e:YA (3.3) BS06 PUB ? N/A A0A5J4YX19 36922595
    741 7y5e:YA (3.3) BS09 PUB ? N/A A0A5J4YX19 36922595
    742 7y5e:YF (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    743 7y5e:YK (3.3) BS05 PUB ? GO:0009507 ... P11392 36922595
    744 7y5e:Z5 (3.3) BS07 PUB ? N/A A0A5J4YNU6 36922595
    745 7y5e:Z5 (3.3) BS08 PUB ? N/A A0A5J4YNU6 36922595
    746 7y5e:Z9 (3.3) BS08 PUB ? N/A A0A5J4YNU6 36922595
    747 7y5e:Z9 (3.3) BS11 PUB ? N/A A0A5J4YNU6 36922595
    748 7y5e:b1 (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    749 7y5e:bH (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    750 7y5e:fJ (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    751 7y5e:j1 (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    752 7y5e:jH (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    753 7y5e:lE (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    754 7y5e:lG (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    755 7y5e:lJ (3.3) BS01 PUB ? GO:0009507 ... P11392 36922595
    756 7y5e:uF (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    757 7y5e:uK (3.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    758 7y5e:wF (3.3) BS10 PUB ? N/A A0A5J4YZM7 36922595
    759 7y5e:wF (3.3) BS11 PUB ? N/A A0A5J4YZM7 36922595
    760 7y5e:wK (3.3) BS10 PUB ? N/A A0A5J4YZM7 36922595
    761 7y5e:wK (3.3) BS11 PUB ? N/A A0A5J4YZM7 36922595
    762 7y5e:xF (3.3) BS06 PUB ? N/A A0A5J4YZM7 36922595
    763 7y5e:xF (3.3) BS10 PUB ? N/A A0A5J4YZM7 36922595
    764 7y5e:xF (3.3) BS11 PUB ? N/A A0A5J4YZM7 36922595
    765 7y5e:xK (3.3) BS06 PUB ? N/A A0A5J4YZM7 36922595
    766 7y5e:xK (3.3) BS10 PUB ? N/A A0A5J4YZM7 36922595
    767 7y5e:xK (3.3) BS11 PUB ? N/A A0A5J4YZM7 36922595
    768 7y5e:yF (3.3) BS08 PUB ? N/A A0A5J4YZH3 36922595
    769 7y5e:yF (3.3) BS09 PUB ? N/A A0A5J4YZH3 36922595
    770 7y5e:yK (3.3) BS08 PUB ? N/A A0A5J4YZH3 36922595
    771 7y5e:yK (3.3) BS09 PUB ? N/A A0A5J4YZH3 36922595
    772 7y7a:A1 (4.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    773 7y7a:A1 (4.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    774 7y7a:A2 (4.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    775 7y7a:A2 (4.3) BS05 PUB ? N/A A0A5J4YX19 36922595
    776 7y7a:A3 (4.3) BS03 PUB ? N/A A0A5J4YZM7 36922595
    777 7y7a:A3 (4.3) BS04 PUB ? N/A A0A5J4YZM7 36922595
    778 7y7a:A3 (4.3) BS05 PUB ? N/A A0A5J4YZM7 36922595
    779 7y7a:A4 (4.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    780 7y7a:A4 (4.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    781 7y7a:A8 (4.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    782 7y7a:A8 (4.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    783 7y7a:AC (4.3) BS03 PUB ? N/A A0A5J4YZM7 36922595
    784 7y7a:AC (4.3) BS04 PUB ? N/A A0A5J4YZM7 36922595
    785 7y7a:AC (4.3) BS05 PUB ? N/A A0A5J4YZM7 36922595
    786 7y7a:AF (4.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    787 7y7a:AF (4.3) BS05 PUB ? N/A A0A5J4YX19 36922595
    788 7y7a:AH (4.3) BS04 PUB ? GO:0009507 ... P11392 36922595
    789 7y7a:AI (4.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    790 7y7a:AI (4.3) BS04 PUB ? N/A A0A5J4YX19 36922595
    791 7y7a:AK (4.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    792 7y7a:AK (4.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    793 7y7a:AM (4.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    794 7y7a:AM (4.3) BS05 PUB ? N/A A0A5J4YX19 36922595
    795 7y7a:AP (4.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    796 7y7a:AP (4.3) BS04 PUB ? N/A A0A5J4YX19 36922595
    797 7y7a:AR (4.3) BS02 PUB ? N/A A0A5J4YX19 36922595
    798 7y7a:AR (4.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    799 7y7a:AS (4.3) BS03 PUB ? N/A A0A5J4YX19 36922595
    800 7y7a:AS (4.3) BS04 PUB ? N/A A0A5J4YX19 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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