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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 941 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 5y6p:lx (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    402 5y6p:ly (3.5) BS08 PUB N/A N/A N/A 29045394
    403 5y6p:ly (3.5) BS09 PUB N/A N/A N/A 29045394
    404 5y6p:lz (3.5) BS07 PUB N/A N/A N/A 29045394
    405 5y6p:lz (3.5) BS08 PUB N/A N/A N/A 29045394
    406 5y6p:m8 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    407 5y6p:n2 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    408 5y6p:n3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    409 5y6p:n4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    410 5y6p:n5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    411 5y6p:n6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    412 5y6p:n7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    413 5y6p:n8 (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    414 5y6p:n9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    415 5y6p:o2 (3.5) BS05 PUB N/A GO:0015979 ... N/A 29045394
    416 5y6p:o8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    417 5y6p:p2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    418 5y6p:p3 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    419 5y6p:p4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    420 5y6p:p5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    421 5y6p:p6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    422 5y6p:p7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    423 5y6p:p8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    424 5y6p:p9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    425 5y6p:r2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    426 5y6p:r3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    427 5y6p:r4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    428 5y6p:r5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    429 5y6p:r6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    430 5y6p:r7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    431 5y6p:r9 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    432 5y6p:s3 (3.5) BS01 PUB N/A GO:0015979 ... N/A 29045394
    433 5y6p:s7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    434 5y6p:t2 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    435 5y6p:t3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    436 5y6p:t4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    437 5y6p:t5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    438 5y6p:t6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    439 5y6p:t7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    440 5y6p:t8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    441 5y6p:t9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    442 5y6p:u6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    443 5y6p:v2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    444 5y6p:v3 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    445 5y6p:v4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    446 5y6p:v5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    447 5y6p:v6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    448 5y6p:v7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    449 5y6p:v9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    450 5y6p:w8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    451 5y6p:x2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    452 5y6p:x3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    453 5y6p:x4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    454 5y6p:x5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    455 5y6p:x6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    456 5y6p:x7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    457 5y6p:x9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    458 5y6p:y2 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    459 5y6p:y6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    460 5y6p:y7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    461 5y6p:y8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    462 5y6p:z2 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    463 5y6p:z3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    464 5y6p:z4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    465 5y6p:z5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    466 5y6p:z6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    467 5y6p:z7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    468 5y6p:z9 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    469 6kgx:21 (2.8) BS07 PUB N/A N/A N/A 32076272
    470 6kgx:21 (2.8) BS08 PUB N/A N/A N/A 32076272
    471 6kgx:24 (2.8) BS06 PUB N/A N/A N/A 32076272
    472 6kgx:24 (2.8) BS07 PUB N/A N/A N/A 32076272
    473 6kgx:A2 (2.8) BS02 PUB N/A N/A N/A 32076272
    474 6kgx:A2 (2.8) BS03 PUB N/A N/A N/A 32076272
    475 6kgx:A6 (2.8) BS02 PUB N/A N/A N/A 32076272
    476 6kgx:A6 (2.8) BS03 PUB N/A N/A N/A 32076272
    477 6kgx:A7 (2.8) BS03 PUB N/A N/A N/A 32076272
    478 6kgx:A7 (2.8) BS04 PUB N/A N/A N/A 32076272
    479 6kgx:A8 (2.8) BS03 PUB N/A N/A N/A 32076272
    480 6kgx:A8 (2.8) BS04 PUB N/A N/A N/A 32076272
    481 6kgx:A9 (2.8) BS02 PUB N/A N/A N/A 32076272
    482 6kgx:A9 (2.8) BS05 PUB N/A N/A N/A 32076272
    483 6kgx:AA (2.8) BS03 PUB N/A N/A N/A 32076272
    484 6kgx:AA (2.8) BS04 PUB N/A N/A N/A 32076272
    485 6kgx:AB (2.8) BS02 PUB N/A N/A N/A 32076272
    486 6kgx:AB (2.8) BS03 PUB N/A N/A N/A 32076272
    487 6kgx:AF (2.8) BS03 PUB N/A N/A N/A 32076272
    488 6kgx:AF (2.8) BS04 PUB N/A N/A N/A 32076272
    489 6kgx:AI (2.8) BS02 PUB N/A N/A N/A 32076272
    490 6kgx:AI (2.8) BS03 PUB N/A N/A N/A 32076272
    491 6kgx:AJ (2.8) BS02 PUB N/A N/A N/A 32076272
    492 6kgx:AJ (2.8) BS06 PUB N/A N/A N/A 32076272
    493 6kgx:B8 (2.8) BS02 PUB N/A N/A N/A 32076272
    494 6kgx:B8 (2.8) BS06 PUB N/A N/A N/A 32076272
    495 6kgx:BA (2.8) BS02 PUB N/A N/A N/A 32076272
    496 6kgx:BA (2.8) BS06 PUB N/A N/A N/A 32076272
    497 6kgx:C1 (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    498 6kgx:C3 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    499 6kgx:I1 (2.8) BS03 PUB ? GO:0009507 ... E2IH77 32076272
    500 6kgx:I4 (2.8) BS03 PUB ? GO:0009507 ... E2IH77 32076272
    501 6kgx:K3 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    502 6kgx:KD (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    503 6kgx:M1 (2.8) BS01 PUB N/A N/A N/A 32076272
    504 6kgx:M1 (2.8) BS06 PUB N/A N/A N/A 32076272
    505 6kgx:M4 (2.8) BS01 PUB N/A N/A N/A 32076272
    506 6kgx:M4 (2.8) BS07 PUB N/A N/A N/A 32076272
    507 6kgx:N9 (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    508 6kgx:NJ (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    509 6kgx:O8 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    510 6kgx:OA (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    511 6kgx:OE (2.8) BS05 PUB ? GO:0009507 ... E2IH77 32076272
    512 6kgx:OG (2.8) BS05 PUB ? GO:0009507 ... E2IH77 32076272
    513 6kgx:PJ (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    514 6kgx:U8 (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    515 6kgx:UA (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    516 6kgx:XJ (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    517 6kgx:Y3 (2.8) BS06 PUB N/A N/A N/A 32076272
    518 6kgx:Y3 (2.8) BS09 PUB N/A N/A N/A 32076272
    519 6kgx:YD (2.8) BS06 PUB N/A N/A N/A 32076272
    520 6kgx:YD (2.8) BS09 PUB N/A N/A N/A 32076272
    521 6kgx:YE (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    522 6kgx:YG (2.8) BS05 PUB ? GO:0009507 ... E2IH77 32076272
    523 6kgx:b7 (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    524 6kgx:bF (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    525 6kgx:j7 (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    526 6kgx:jF (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    527 6kgx:kE (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    528 6kgx:l6 (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    529 6kgx:lB (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    530 6kgx:p1 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    531 6kgx:p4 (2.8) BS05 PUB ? GO:0009507 ... E2IH77 32076272
    532 6kgx:r1 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    533 6kgx:r4 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    534 6kgx:uE (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    535 6kgx:uG (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    536 6kgx:wE (2.8) BS10 PUB N/A N/A N/A 32076272
    537 6kgx:wE (2.8) BS11 PUB N/A N/A N/A 32076272
    538 6kgx:wE (2.8) BS12 PUB N/A N/A N/A 32076272
    539 6kgx:wG (2.8) BS10 PUB N/A N/A N/A 32076272
    540 6kgx:wG (2.8) BS11 PUB N/A N/A N/A 32076272
    541 6kgx:x1 (2.8) BS05 PUB ? GO:0009507 ... E2IH77 32076272
    542 6kgx:x4 (2.8) BS05 PUB ? GO:0009507 ... E2IH77 32076272
    543 6kgx:xE (2.8) BS07 PUB N/A N/A N/A 32076272
    544 6kgx:xE (2.8) BS11 PUB N/A N/A N/A 32076272
    545 6kgx:xE (2.8) BS12 PUB N/A N/A N/A 32076272
    546 6kgx:xG (2.8) BS06 PUB N/A N/A N/A 32076272
    547 6kgx:xG (2.8) BS10 PUB N/A N/A N/A 32076272
    548 6kgx:xG (2.8) BS11 PUB N/A N/A N/A 32076272
    549 6kgx:yE (2.8) BS07 PUB N/A N/A N/A 32076272
    550 6kgx:yE (2.8) BS08 PUB N/A N/A N/A 32076272
    551 6kgx:yG (2.8) BS08 PUB N/A N/A N/A 32076272
    552 6kgx:yG (2.8) BS09 PUB N/A N/A N/A 32076272
    553 7ezx:A1 (3.0) BS04 PUB ? N/A A0A5J4YX19 N/A
    554 7ezx:A1 (3.0) BS05 PUB ? N/A A0A5J4YX19 N/A
    555 7ezx:A7 (3.0) BS02 PUB ? N/A A0A5J4YX19 N/A
    556 7ezx:A7 (3.0) BS03 PUB ? N/A A0A5J4YX19 N/A
    557 7ezx:A9 (3.0) BS02 PUB ? N/A A0A5J4YX19 N/A
    558 7ezx:A9 (3.0) BS03 PUB ? N/A A0A5J4YX19 N/A
    559 7ezx:AB (3.0) BS04 PUB ? N/A A0A5J4YZM7 N/A
    560 7ezx:AB (3.0) BS05 PUB ? N/A A0A5J4YZM7 N/A
    561 7ezx:AF (3.0) BS02 PUB ? N/A A0A5J4YX19 N/A
    562 7ezx:AF (3.0) BS03 PUB ? N/A A0A5J4YX19 N/A
    563 7ezx:AI (3.0) BS02 PUB ? N/A A0A5J4YX19 N/A
    564 7ezx:AI (3.0) BS03 PUB ? N/A A0A5J4YX19 N/A
    565 7ezx:AK (3.0) BS04 PUB ? N/A A0A5J4YX19 N/A
    566 7ezx:AK (3.0) BS05 PUB ? N/A A0A5J4YX19 N/A
    567 7ezx:AM (3.0) BS04 PUB ? N/A A0A5J4YZM7 N/A
    568 7ezx:AM (3.0) BS05 PUB ? N/A A0A5J4YZM7 N/A
    569 7ezx:AQ (3.0) BS04 PUB ? GO:0009507 ... E2IH77 N/A
    570 7ezx:BB (3.0) BS02 PUB ? N/A A0A5J4YZH3 N/A
    571 7ezx:BB (3.0) BS06 PUB ? N/A A0A5J4YZH3 N/A
    572 7ezx:BM (3.0) BS02 PUB ? N/A A0A5J4YZH3 N/A
    573 7ezx:BM (3.0) BS06 PUB ? N/A A0A5J4YZH3 N/A
    574 7ezx:IQ (3.0) BS03 PUB ? GO:0009507 ... E2IH77 N/A
    575 7ezx:KA (3.0) BS03 PUB ? GO:0009507 ... E2IH77 N/A
    576 7ezx:KG (3.0) BS04 PUB ? GO:0009507 ... E2IH77 N/A
    577 7ezx:KN (3.0) BS03 PUB ? GO:0009507 ... E2IH77 N/A
    578 7ezx:MA (3.0) BS03 PUB ? N/A A0A5J4YNU6 N/A
    579 7ezx:MA (3.0) BS04 PUB ? N/A A0A5J4YNU6 N/A
    580 7ezx:MG (3.0) BS07 PUB ? N/A A0A5J4YNU6 N/A
    581 7ezx:MG (3.0) BS08 PUB ? N/A A0A5J4YNU6 N/A
    582 7ezx:MN (3.0) BS04 PUB ? N/A A0A5J4YNU6 N/A
    583 7ezx:MN (3.0) BS05 PUB ? N/A A0A5J4YNU6 N/A
    584 7ezx:MQ (3.0) BS06 PUB ? N/A A0A5J4YNU6 N/A
    585 7ezx:MQ (3.0) BS07 PUB ? N/A A0A5J4YNU6 N/A
    586 7ezx:OJ (3.0) BS03 PUB ? GO:0009507 ... E2IH77 N/A
    587 7ezx:OL (3.0) BS03 PUB ? GO:0009507 ... E2IH77 N/A
    588 7ezx:UB (3.0) BS01 PUB ? GO:0009507 ... E2IH77 N/A
    589 7ezx:UM (3.0) BS01 PUB ? GO:0009507 ... E2IH77 N/A
    590 7ezx:j1 (3.0) BS01 PUB ? GO:0009507 ... E2IH77 N/A
    591 7ezx:jK (3.0) BS01 PUB ? GO:0009507 ... E2IH77 N/A
    592 7ezx:kJ (3.0) BS04 PUB ? GO:0009507 ... E2IH77 N/A
    593 7ezx:lB (3.0) BS01 PUB ? GO:0009507 ... E2IH77 N/A
    594 7ezx:lM (3.0) BS01 PUB ? GO:0009507 ... E2IH77 N/A
    595 7ezx:mJ (3.0) BS04 PUB ? GO:0009507 ... E2IH77 N/A
    596 7ezx:sJ (3.0) BS03 PUB ? GO:0009507 ... E2IH77 N/A
    597 7ezx:sL (3.0) BS03 PUB ? GO:0009507 ... E2IH77 N/A
    598 7ezx:wJ (3.0) BS08 PUB ? N/A A0A5J4YZM7 N/A
    599 7ezx:wJ (3.0) BS09 PUB ? N/A A0A5J4YZM7 N/A
    600 7ezx:wL (3.0) BS08 PUB ? N/A A0A5J4YZM7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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