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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 941 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5y6p:c6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    202 5y6p:c7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    203 5y6p:c8 (3.5) BS09 PUB N/A N/A N/A 29045394
    204 5y6p:c8 (3.5) BS10 PUB N/A N/A N/A 29045394
    205 5y6p:c9 (3.5) BS09 PUB N/A N/A N/A 29045394
    206 5y6p:c9 (3.5) BS10 PUB N/A N/A N/A 29045394
    207 5y6p:cB (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    208 5y6p:cE (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    209 5y6p:cF (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    210 5y6p:cH (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    211 5y6p:cJ (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    212 5y6p:cL (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    213 5y6p:cM (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    214 5y6p:cN (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    215 5y6p:cO (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    216 5y6p:cP (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    217 5y6p:cQ (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    218 5y6p:cR (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    219 5y6p:cY (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    220 5y6p:cn (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    221 5y6p:co (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    222 5y6p:cp (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    223 5y6p:cq (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    224 5y6p:cr (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    225 5y6p:cs (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    226 5y6p:cz (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    227 5y6p:d3 (3.5) BS10 PUB N/A N/A N/A 29045394
    228 5y6p:d3 (3.5) BS11 PUB N/A N/A N/A 29045394
    229 5y6p:d6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    230 5y6p:d7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    231 5y6p:d8 (3.5) BS05 PUB N/A N/A N/A 29045394
    232 5y6p:d8 (3.5) BS10 PUB N/A N/A N/A 29045394
    233 5y6p:d9 (3.5) BS04 PUB N/A N/A N/A 29045394
    234 5y6p:d9 (3.5) BS11 PUB N/A N/A N/A 29045394
    235 5y6p:dB (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    236 5y6p:dD (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    237 5y6p:dF (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    238 5y6p:dH (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    239 5y6p:dK (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    240 5y6p:dL (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    241 5y6p:dN (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    242 5y6p:dP (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    243 5y6p:dR (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    244 5y6p:dT (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    245 5y6p:dV (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    246 5y6p:dX (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    247 5y6p:dY (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    248 5y6p:dd (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    249 5y6p:df (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    250 5y6p:dh (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    251 5y6p:di (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    252 5y6p:dj (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    253 5y6p:dl (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    254 5y6p:dn (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    255 5y6p:dp (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    256 5y6p:dr (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    257 5y6p:dt (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    258 5y6p:dv (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    259 5y6p:dw (3.5) BS10 PUB N/A N/A N/A 29045394
    260 5y6p:dw (3.5) BS11 PUB N/A N/A N/A 29045394
    261 5y6p:dx (3.5) BS11 PUB N/A N/A N/A 29045394
    262 5y6p:dx (3.5) BS12 PUB N/A N/A N/A 29045394
    263 5y6p:e2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    264 5y6p:e6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    265 5y6p:e7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    266 5y6p:e8 (3.5) BS08 PUB N/A N/A N/A 29045394
    267 5y6p:e8 (3.5) BS09 PUB N/A N/A N/A 29045394
    268 5y6p:e9 (3.5) BS09 PUB N/A N/A N/A 29045394
    269 5y6p:e9 (3.5) BS10 PUB N/A N/A N/A 29045394
    270 5y6p:eB (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    271 5y6p:eD (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    272 5y6p:eF (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    273 5y6p:eH (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    274 5y6p:eJ (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    275 5y6p:eL (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    276 5y6p:eN (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    277 5y6p:eP (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    278 5y6p:eR (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    279 5y6p:eT (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    280 5y6p:eV (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    281 5y6p:eX (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    282 5y6p:eY (3.5) BS06 PUB N/A N/A N/A 29045394
    283 5y6p:eY (3.5) BS07 PUB N/A N/A N/A 29045394
    284 5y6p:eZ (3.5) BS07 PUB N/A N/A N/A 29045394
    285 5y6p:eZ (3.5) BS08 PUB N/A N/A N/A 29045394
    286 5y6p:eb (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    287 5y6p:ec (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    288 5y6p:ee (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    289 5y6p:eg (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    290 5y6p:ei (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    291 5y6p:el (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    292 5y6p:en (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    293 5y6p:ep (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    294 5y6p:er (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    295 5y6p:et (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    296 5y6p:ev (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    297 5y6p:ex (3.5) BS01 PUB N/A GO:0015979 ... N/A 29045394
    298 5y6p:ey (3.5) BS10 PUB N/A N/A N/A 29045394
    299 5y6p:ey (3.5) BS11 PUB N/A N/A N/A 29045394
    300 5y6p:ez (3.5) BS10 PUB N/A N/A N/A 29045394
    301 5y6p:ez (3.5) BS11 PUB N/A N/A N/A 29045394
    302 5y6p:f2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    303 5y6p:f3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    304 5y6p:f3 (3.5) BS05 PUB N/A GO:0015979 ... N/A 29045394
    305 5y6p:f6 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    306 5y6p:f8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    307 5y6p:fa (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    308 5y6p:fc (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    309 5y6p:ff (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    310 5y6p:fi (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    311 5y6p:fj (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    312 5y6p:fm (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    313 5y6p:fo (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    314 5y6p:fq (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    315 5y6p:fs (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    316 5y6p:fu (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    317 5y6p:fw (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    318 5y6p:fy (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    319 5y6p:g7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    320 5y6p:g8 (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    321 5y6p:ga (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    322 5y6p:gd (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    323 5y6p:ge (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    324 5y6p:gf (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    325 5y6p:gg (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    326 5y6p:gi (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    327 5y6p:gk (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    328 5y6p:gm (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    329 5y6p:gn (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    330 5y6p:gp (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    331 5y6p:gr (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    332 5y6p:gt (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    333 5y6p:gv (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    334 5y6p:gx (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    335 5y6p:gy (3.5) BS10 PUB N/A N/A N/A 29045394
    336 5y6p:gy (3.5) BS11 PUB N/A N/A N/A 29045394
    337 5y6p:gz (3.5) BS10 PUB N/A N/A N/A 29045394
    338 5y6p:gz (3.5) BS11 PUB N/A N/A N/A 29045394
    339 5y6p:h2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    340 5y6p:h3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    341 5y6p:h8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    342 5y6p:hA (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    343 5y6p:hB (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    344 5y6p:hD (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    345 5y6p:hG (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    346 5y6p:hH (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    347 5y6p:hJ (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    348 5y6p:hL (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    349 5y6p:hN (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    350 5y6p:hP (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    351 5y6p:hR (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    352 5y6p:hT (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    353 5y6p:hV (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    354 5y6p:hX (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    355 5y6p:hY (3.5) BS06 PUB N/A N/A N/A 29045394
    356 5y6p:hY (3.5) BS07 PUB N/A N/A N/A 29045394
    357 5y6p:hZ (3.5) BS07 PUB N/A N/A N/A 29045394
    358 5y6p:hZ (3.5) BS08 PUB N/A N/A N/A 29045394
    359 5y6p:i7 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    360 5y6p:iC (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    361 5y6p:iD (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    362 5y6p:iE (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    363 5y6p:iF (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    364 5y6p:iG (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    365 5y6p:iH (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    366 5y6p:j2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    367 5y6p:j3 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    368 5y6p:j6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    369 5y6p:jI (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    370 5y6p:jJ (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    371 5y6p:jK (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    372 5y6p:jL (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    373 5y6p:jM (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    374 5y6p:jN (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    375 5y6p:jO (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    376 5y6p:jP (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    377 5y6p:kQ (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    378 5y6p:kR (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    379 5y6p:kS (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    380 5y6p:kT (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    381 5y6p:kU (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    382 5y6p:kV (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    383 5y6p:kW (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    384 5y6p:kX (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    385 5y6p:l2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    386 5y6p:l3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    387 5y6p:l6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    388 5y6p:l7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    389 5y6p:l8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    390 5y6p:lb (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    391 5y6p:ld (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    392 5y6p:lf (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    393 5y6p:lh (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    394 5y6p:lj (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    395 5y6p:ll (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    396 5y6p:ln (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    397 5y6p:lp (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    398 5y6p:lr (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    399 5y6p:lt (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    400 5y6p:lv (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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