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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ptv:A (2.3) BS01 PTR 3.1.3.48 GO:0004725 ... P18031 7540771
    2 1pty:A (1.85) BS01 PTR 3.1.3.48 GO:0004725 ... P18031 9391040
    3 1pty:A (1.85) BS02 PTR 3.1.3.48 GO:0004725 ... P18031 9391040
    4 2cjz:A (1.7) BS01 PTR 3.1.3.48 GO:0004725 ... P54829 19167335
    5 2j17:A (2.84) BS03 PTR 3.1.3.48 GO:0006470 ... P40479 17495930
    6 2j17:B (2.84) BS02 PTR 3.1.3.48 GO:0006470 ... P40479 17495930
    7 2qyq:A (1.948) BS01 PTR ? GO:0003723 ... P30086 N/A
    8 4f5b:A (1.57) BS01 PTR 2.7.10.2 N/A P12931 23012655
    9 6e8i:A (1.68) BS01 PTR ? N/A D3HJY4 30382091
    10 6u1q:A (2.87) BS01 PTR ? GO:0045226 ... Q9KTG5 32841296
    11 6u1q:B (2.87) BS01 PTR ? GO:0045226 ... Q9KTG5 32841296
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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