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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1qyy:A (2.8) BS01 PT ? N/A P07359 14993663
    2 1qyy:A (2.8) BS02 PT ? N/A P07359 14993663
    3 1qyy:G (2.8) BS01 PT ? N/A P07359 14993663
    4 3iwl:A (1.6) BS01 PT ? GO:0005507 ... O00244 19807176
    5 4dpe:A (1.96) BS06 PT 3.4.24.17 GO:0004222 ... P08254 23660647
    6 4dpe:B (1.96) BS06 PT 3.4.24.17 GO:0004222 ... P08254 23660647
    7 4efq:A (1.94) BS01 PT ? GO:0005576 ... E5EVW2 22948915
    8 4efq:B (1.94) BS01 PT ? GO:0005576 ... E5EVW2 22948915
    9 4ja1:A (1.96) BS06 PT 3.4.24.17 GO:0004222 ... P08254 23660647
    10 4ja1:B (1.96) BS07 PT 3.4.24.17 GO:0004222 ... P08254 23660647
    11 4qot:A (2.2) BS01 PT 3.6.3.54 GO:0005507 ... O00244 27305454
    12 4qot:B (2.2) BS01 PT 3.6.3.54 GO:0005507 ... O00244 27305454
    13 4qot:B (2.2) BS02 PT 3.6.3.54 GO:0005507 ... O00244 27305454
    14 4ydx:A (1.602) BS01 PT ? GO:0005507 ... O00244 26327386
    15 5t7l:A (2.83) BS01 PT ? GO:0005507 ... O00244 31283225
    16 6g5v:A (1.96) BS01 PT 3.2.1.17 GO:0003796 ... P00698 29904761
    17 6g5v:A (1.96) BS02 PT 3.2.1.17 GO:0003796 ... P00698 29904761
    18 6g5y:A (1.49) BS01 PT 3.2.1.17 GO:0003796 ... P00698 29904761
    19 6g5y:A (1.49) BS02 PT 3.2.1.17 GO:0003796 ... P00698 29904761
    20 7npm:AAA (1.86) BS01 PT 3.1.27.- GO:0001525 ... P03950 34784565
    21 9enz:AAA (1.6) BS01 PT 3.2.1.17 GO:0003796 ... P00698 38727007
    22 9eo8:BBB (1.76) BS02 PT 4.6.1.18 GO:0004519 ... P61824 38727007
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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