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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 375 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5zw8:A (1.689) BS04 PRO 1.3.8.14 GO:0003995 ... Q5W271 30095206
    202 6af6:A (1.62) BS04 PRO 1.3.8.14 GO:0003995 ... Q5W271 30095206
    203 6af6:A (1.62) BS05 PRO 1.3.8.14 GO:0003995 ... Q5W271 30095206
    204 6b4e:A (1.75) BS01 PRO ? GO:0005643 ... Q12315 29899397
    205 6b4e:D (1.75) BS01 PRO ? N/A P49686 29899397
    206 6bsn:A (2.15) BS02 PRO 1.2.1.88
    1.5.5.2    		 GO:0000166 ... Q89E26 29295473
    207 6bsn:A (2.15) BS03 PRO 1.2.1.88
    1.5.5.2    		 GO:0000166 ... Q89E26 29295473
    208 6bsn:A (2.15) BS04 PRO 1.2.1.88
    1.5.5.2    		 GO:0000166 ... Q89E26 29295473
    209 6bsn:B (2.15) BS02 PRO 1.2.1.88
    1.5.5.2    		 GO:0000166 ... Q89E26 29295473
    210 6bsn:B (2.15) BS03 PRO 1.2.1.88
    1.5.5.2    		 GO:0000166 ... Q89E26 29295473
    211 6bsn:B (2.15) BS04 PRO 1.2.1.88
    1.5.5.2    		 GO:0000166 ... Q89E26 29295473
    212 6d7j:A (2.24) BS01 PRO ? GO:0004553 ... K5ZWV5 30230652
    213 6d7j:D (2.24) BS01 PRO ? GO:0004553 ... K5ZWV5 30230652
    214 6dvo:A (1.98) BS02 PRO ? N/A F8W4B7 30118224
    215 6ehj:A (2.1) BS05 PRO 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 32111831
    216 6ehj:B (2.1) BS06 PRO 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 32111831
    217 6emf:B (2.65) BS01 PRO ? GO:0005634 ... G0S4M2 29245012
    218 6emf:B (2.65) BS02 PRO ? GO:0005634 ... G0S4M2 29245012
    219 6h2q:A (1.78) BS04 PRO 3.4.13.9 GO:0004181 ... P12955 30066404
    220 6h2q:B (1.78) BS04 PRO 3.4.13.9 GO:0004181 ... P12955 30066404
    221 6ios:A (2.35) BS01 PRO ? N/A Q9KQ43 30745373 MOAD: Kd=23.8uM
    PDBbind: -logKd/Ki=4.10, Kd=79.4uM
    222 6j7c:A (2.7) BS01 PRO ? GO:0047580 ... H3ZMH5 30773259
    223 6mni:A (1.696) BS01 PRO N/A N/A N/A 33721671
    224 6mni:B (1.696) BS01 PRO N/A N/A N/A 33721671
    225 6nab:A (2.0) BS02 PRO 6.1.1.15 GO:0000166 ... A0A4V8H034 N/A
    226 6nab:B (2.0) BS02 PRO 6.1.1.15 GO:0000166 ... A0A4V8H034 N/A
    227 6nag:A (2.683) BS01 PRO ? N/A Q8A9T8 30835452
    228 6nag:A (2.683) BS02 PRO ? N/A Q8A9T8 30835452
    229 6q0g:A (2.0) BS01 PRO ? N/A Q3K7T6 31909676
    230 6qsc:A (1.569) BS03 PRO 3.4.13.9 GO:0004181 ... P12955 33877262
    231 6qsc:B (1.569) BS03 PRO 3.4.13.9 GO:0004181 ... P12955 33877262
    232 6rng:B (2.15) BS02 PRO 4.1.2.13 GO:0003729 ... Q9SJQ9 N/A
    233 6rng:G (2.15) BS02 PRO 4.1.2.13 GO:0003729 ... Q9SJQ9 N/A
    234 6sre:A (1.39) BS03 PRO 3.4.13.9 GO:0004181 ... P12955 32598484
    235 6sre:B (1.39) BS03 PRO 3.4.13.9 GO:0004181 ... P12955 32598484
    236 6srf:A (1.847) BS03 PRO 3.4.13.9 GO:0004181 ... P12955 32598484
    237 6srf:B (1.847) BS03 PRO 3.4.13.9 GO:0004181 ... P12955 32598484
    238 6srg:A (2.558) BS04 PRO 3.4.13.9 GO:0004181 ... P12955 32598484
    239 6srg:B (2.558) BS04 PRO 3.4.13.9 GO:0004181 ... P12955 32598484
    240 6t3e:A (2.6) BS01 PRO 1.5.1.21 GO:0000166 ... H3ZMH3 32355045
    241 6t3e:B (2.6) BS01 PRO 1.5.1.21 GO:0000166 ... H3ZMH3 32355045
    242 6t7k:A (1.79) BS01 PRO 6.1.1.15 GO:0000166 ... Q8I5R7 N/A
    243 6x9c:A (1.44) BS03 PRO 1.2.1.88
    1.5.5.2    		 GO:0000166 ... F7X6I3 33333077 MOAD: Ki=11mM
    244 6x9c:B (1.44) BS03 PRO 1.2.1.88
    1.5.5.2    		 GO:0000166 ... F7X6I3 33333077 MOAD: Ki=11mM
    245 6yb6:H (1.33) BS04 PRO 3.4.21.5 GO:0004252 ... P00734 N/A
    246 6ywt:A (1.05) BS02 PRO 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    247 6zm9:A (1.45) BS01 PRO N/A N/A N/A 33567250
    248 6zx1:A (1.0) BS02 PRO 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    249 6zx1:A (1.0) BS03 PRO 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    250 6zx2:A (1.2) BS02 PRO 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    251 6zx3:A (1.15) BS02 PRO 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    252 7bbu:A (2.19) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 N/A
    253 7bem:E (2.52) BS01 PRO ? N/A P0DTC2 33756110
    254 7bem:E (2.52) BS02 PRO ? N/A P0DTC2 33756110
    255 7dt0:A (2.43) BS03 PRO ? GO:0046872 ... S5TUM1 N/A
    256 7dt0:B (2.43) BS02 PRO ? GO:0046872 ... S5TUM1 N/A
    257 7dt0:D (2.43) BS03 PRO ? GO:0046872 ... S5TUM1 N/A
    258 7dt0:E (2.43) BS03 PRO ? GO:0046872 ... S5TUM1 N/A
    259 7dt0:F (2.43) BS03 PRO ? GO:0046872 ... S5TUM1 N/A
    260 7dt0:G (2.43) BS03 PRO ? GO:0046872 ... S5TUM1 N/A
    261 7dt0:H (2.43) BS03 PRO ? GO:0046872 ... S5TUM1 N/A
    262 7dzz:A (1.95) BS01 PRO ? GO:0046872 ... S5TUM1 N/A
    263 7dzz:B (1.95) BS01 PRO ? GO:0046872 ... S5TUM1 N/A
    264 7e00:A (1.92) BS01 PRO ? GO:0046872 ... S5TUM1 N/A
    265 7e00:B (1.92) BS01 PRO ? GO:0046872 ... S5TUM1 N/A
    266 7e01:A (1.72) BS01 PRO ? GO:0046872 ... S5TUM1 N/A
    267 7e07:A (2.14) BS02 PRO ? GO:0046872 ... S5TUM1 N/A
    268 7e07:B (2.14) BS03 PRO ? GO:0046872 ... S5TUM1 N/A
    269 7evv:A (1.704) BS02 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 35333915
    270 7f96:A (2.577) BS02 PRO 6.1.1.15 GO:0000166 ... Q8I5R7 N/A
    271 7f97:A (2.394) BS01 PRO 6.1.1.15 GO:0000166 ... Q8I5R7 N/A
    272 7f97:B (2.394) BS01 PRO 6.1.1.15 GO:0000166 ... Q8I5R7 N/A
    273 7f97:C (2.394) BS01 PRO 6.1.1.15 GO:0000166 ... Q8I5R7 N/A
    274 7f97:D (2.394) BS01 PRO 6.1.1.15 GO:0000166 ... Q8I5R7 N/A
    275 7f98:A (1.999) BS05 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    276 7f98:B (1.999) BS05 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    277 7f99:A (1.979) BS05 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    278 7f99:B (1.979) BS04 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    279 7f9a:A (1.999) BS05 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    280 7f9a:B (1.999) BS05 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    281 7f9b:A (1.995) BS04 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    282 7f9b:B (1.995) BS04 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    283 7f9c:A (2.196) BS05 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    284 7f9c:B (2.196) BS04 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    285 7f9d:A (2.497) BS06 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    286 7f9d:B (2.497) BS04 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    287 7f9r:A (1.83) BS03 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 N/A
    288 7fak:A (1.899) BS02 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 36854028
    289 7fal:A (3.219) BS02 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 36854028
    290 7fal:B (3.219) BS02 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 36854028
    291 7fam:A (2.42) BS02 PRO 6.1.1.15 GO:0000166 ... A0A125YZ49 36854028
    292 7fan:A (1.769) BS02 PRO 6.1.1.15 GO:0000166 ... A0A125YZ49 36854028
    293 7k5n:A (1.8) BS01 PRO 2.7.7.65 N/A A0A3S5WQC2 34233153
    294 7kd5:A (1.551) BS06 PRO ? GO:0008643 ... A0A4P1LXE0
    Q91MK1    		 34578318
    295 7kmh:C (1.72) BS01 PRO ? N/A P0DTC2 33820835
    296 7osy:A (2.23) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    297 7osy:B (2.23) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    298 7osz:A (2.46) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    299 7osz:B (2.46) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    300 7ot0:A (2.32) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    301 7ot0:B (2.32) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    302 7ot1:A (2.71) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    303 7ot1:B (2.71) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    304 7ot2:A (2.48) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    305 7ot2:B (2.48) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    306 7ot3:A (2.53) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    307 7ot3:B (2.53) BS01 PRO 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 34360555
    308 7ov0:A (0.95) BS01 PRO 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    309 7ov0:A (0.95) BS02 PRO 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    310 7pnd:A (1.85) BS02 PRO ? GO:0006508 ... O86049 36173175
    311 7pnd:A (1.85) BS03 PRO ? GO:0006508 ... O86049 36173175
    312 7pnd:B (1.85) BS02 PRO ? GO:0006508 ... O86049 36173175
    313 7pnd:B (1.85) BS03 PRO ? GO:0006508 ... O86049 36173175
    314 7pnd:B (1.85) BS04 PRO ? GO:0006508 ... O86049 36173175
    315 7pnd:B (1.85) BS05 PRO ? GO:0006508 ... O86049 36173175
    316 7pnd:B (1.85) BS06 PRO ? GO:0006508 ... O86049 36173175
    317 7pol:A (1.95) BS04 PRO ? GO:0006508 ... O86049 36173175
    318 7pol:A (1.95) BS05 PRO ? GO:0006508 ... O86049 36173175
    319 7pol:A (1.95) BS06 PRO ? GO:0006508 ... O86049 36173175
    320 7pol:B (1.95) BS04 PRO ? GO:0006508 ... O86049 36173175
    321 7poo:B (2.7) BS03 PRO ? GO:0006508 ... O86049 36173175
    322 7poq:A (1.85) BS03 PRO ? GO:0006508 ... O86049 36173175
    323 7poq:A (1.85) BS04 PRO ? GO:0006508 ... O86049 36173175
    324 7pou:A (2.03) BS03 PRO ? GO:0006508 ... O86049 36173175
    325 7pou:A (2.03) BS04 PRO ? GO:0006508 ... O86049 36173175
    326 7pou:A (2.03) BS05 PRO ? GO:0006508 ... O86049 36173175
    327 7pou:B (2.03) BS03 PRO ? GO:0006508 ... O86049 36173175
    328 7pou:B (2.03) BS04 PRO ? GO:0006508 ... O86049 36173175
    329 7pou:B (2.03) BS05 PRO ? GO:0006508 ... O86049 36173175
    330 7pou:B (2.03) BS06 PRO ? GO:0006508 ... O86049 36173175
    331 7q1h:A (1.31) BS02 PRO 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    332 7qb7:A (1.9) BS01 PRO 6.1.1.15 GO:0000166 ... Q8I5R7 N/A
    333 7qc2:A (2.28) BS01 PRO 6.1.1.15 GO:0000166 ... Q8I5R7 N/A
    334 7ufj:A (2.5) BS01 PRO ? N/A Q95460 36403855
    335 7v8j:B (2.519) BS01 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 N/A
    336 7v8k:A (2.47) BS01 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 N/A
    337 7v8k:B (2.47) BS01 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 N/A
    338 7vc1:A (1.892) BS02 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 36854028
    339 7vc2:A (2.096) BS02 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 36854028
    340 7vc2:B (2.096) BS02 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 36854028
    341 7vc3:A (1.973) BS02 PRO 6.1.1.15 GO:0000166 ... A0A7J6JUK2 36854028
    342 7xzp:A (2.56) BS02 PRO 6.3.4.3 GO:0004329 ... A0A379CIH2 38049785
    343 7xzp:A (2.56) BS03 PRO 6.3.4.3 GO:0004329 ... A0A379CIH2 38049785
    344 7xzp:A (2.56) BS04 PRO 6.3.4.3 GO:0004329 ... A0A379CIH2 38049785
    345 7xzp:A (2.56) BS05 PRO 6.3.4.3 GO:0004329 ... A0A379CIH2 38049785
    346 7xzp:A (2.56) BS06 PRO 6.3.4.3 GO:0004329 ... A0A379CIH2 38049785
    347 7xzp:B (2.56) BS01 PRO 6.3.4.3 GO:0004329 ... A0A379CIH2 38049785
    348 7xzp:B (2.56) BS04 PRO 6.3.4.3 GO:0004329 ... A0A379CIH2 38049785
    349 7xzp:B (2.56) BS05 PRO 6.3.4.3 GO:0004329 ... A0A379CIH2 38049785
    350 7xzp:B (2.56) BS06 PRO 6.3.4.3 GO:0004329 ... A0A379CIH2 38049785
    351 7xzp:B (2.56) BS07 PRO 6.3.4.3 GO:0004329 ... A0A379CIH2 38049785
    352 8h7y:A (2.14) BS03 PRO ? GO:0046872 ... S5TUM1 36974966
    353 8h7y:B (2.14) BS03 PRO ? GO:0046872 ... S5TUM1 36974966
    354 8hrh:B (2.07) BS02 PRO N/A N/A N/A 37547453
    355 8i91:B (3.3) BS01 PRO ? GO:0005298 ... Q9NP91 37684251
    356 8i91:D (3.3) BS01 PRO ? GO:0005298 ... Q9NP91 37684251
    357 8jv2:A (1.3) BS01 PRO N/A N/A B6BQH5 N/A
    358 8qh0:A (1.87) BS01 PRO N/A N/A P0DTC2 N/A
    359 8u7b:B (2.66) BS01 PRO ? N/A A0A1I7NFG5 38844755
    360 8u7b:B (2.66) BS02 PRO ? N/A A0A1I7NFG5 38844755
    361 8u7b:B (2.66) BS03 PRO ? N/A A0A1I7NFG5 38844755
    362 8u7b:B (2.66) BS04 PRO ? N/A A0A1I7NFG5 38844755
    363 8u7b:B (2.66) BS05 PRO ? N/A A0A1I7NFG5 38844755
    364 8u7b:C (2.66) BS02 PRO ? N/A A0A1I7NFD7 38844755
    365 8wko:A (2.91) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    366 8wko:B (2.91) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    367 8wkr:A (2.05) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    368 8wkr:B (2.05) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    369 8wkr:C (2.05) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    370 8wkr:D (2.05) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    371 8y0p:A (2.62) BS02 PRO ? GO:0007155 ... P35222 N/A
    372 8y0p:A (2.62) BS03 PRO ? GO:0007155 ... P35222 N/A
    373 8y0p:B (2.62) BS01 PRO ? GO:0007155 ... P35222 N/A
    374 8z10:A (2.35) BS01 PRO ? N/A P35222 N/A
    375 9bul:A (2.1) BS03 PRO N/A GO:0003677 ... Q9X1T8 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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