Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ei6:A (2.1) BS03 PPF 3.11.1.2 GO:0016787 ... Q51782 N/A
    2 1ei6:C (2.1) BS03 PPF 3.11.1.2 GO:0016787 ... Q51782 N/A
    3 1ei6:D (2.1) BS03 PPF 3.11.1.2 GO:0016787 ... Q51782 N/A
    4 1nki:A (0.95) BS02 PPF 2.5.1.18 GO:0004364 ... Q9I4K6 15504029 MOAD: Kd=0.2uM
    PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    5 1nki:B (0.95) BS02 PPF 2.5.1.18 GO:0004364 ... Q9I4K6 15504029 MOAD: Kd=0.2uM
    PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    6 2it4:A (2.0) BS02 PPF 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 17314045 MOAD: Ki=24.1mM
    PDBbind: -logKd/Ki=1.62, Ki=24.1mM
    7 2rk8:A (2.0) BS02 PPF 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 18197707 MOAD: Ki=230uM
    PDBbind: -logKd/Ki=3.64, Ki=230uM
    8 2rk8:B (2.0) BS02 PPF 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 18197707 MOAD: Ki=230uM
    9 3kd5:E (2.69) BS03 PPF 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21566148
    10 3t01:A (1.6) BS03 PPF 3.6.1.9 GO:0016787 ... Q92UV8 22035792 MOAD: Ki=33uM
    PDBbind: -logKd/Ki=4.48, Ki=33uM
    11 4mv7:A (1.73) BS01 PPF 6.3.4.14 GO:0003824 ... P43873 26020841
    12 5hp1:A (2.9) BS03 PPF 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 27192549
    13 5hp1:C (2.9) BS02 PPF 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 27192549
    14 8dtd:A (1.95) BS01 PPF 2.5.1.- GO:0000287 ... Q739M9 36525630
    15 8dtd:B (1.95) BS01 PPF 2.5.1.- GO:0000287 ... Q739M9 36525630
    16 8exx:A (3.3) BS05 PPF N/A N/A H9E937 39197451
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218