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BioLiP
Download all results in tab-seperated text for 3495 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 1u1c:F (2.2) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    602 1u1d:A (2.001) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    603 1u1d:B (2.001) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    604 1u1d:C (2.001) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    605 1u1d:D (2.001) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    606 1u1d:E (2.001) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    607 1u1d:F (2.001) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    608 1u1e:A (2.001) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    609 1u1e:B (2.001) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    610 1u1e:C (2.001) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    611 1u1e:D (2.001) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    612 1u1e:E (2.001) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    613 1u1e:F (2.001) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    614 1u1f:A (2.3) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    615 1u1f:B (2.3) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    616 1u1f:C (2.3) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    617 1u1f:D (2.3) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    618 1u1f:E (2.3) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    619 1u1f:F (2.3) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    620 1u1i:A (1.9) BS01 PO4 5.5.1.4 GO:0000166 ... O28480 15628862
    621 1u1i:B (1.9) BS01 PO4 5.5.1.4 GO:0000166 ... O28480 15628862
    622 1u1i:C (1.9) BS01 PO4 5.5.1.4 GO:0000166 ... O28480 15628862
    623 1u1i:D (1.9) BS01 PO4 5.5.1.4 GO:0000166 ... O28480 15628862
    624 1u99:A (2.6) BS01 PO4 ? GO:0000725 ... P0A7G6 15364575
    625 1ucn:A (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    626 1ucn:B (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    627 1ucn:C (2.0) BS01 PO4 2.7.4.6 GO:0000287 ... P15531 12972261
    628 1uf9:B (2.8) BS01 PO4 2.7.1.24 GO:0004140 ... Q56416 15526298
    629 1upu:A (2.5) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    630 1upu:B (2.5) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    631 1upu:C (2.5) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    632 1upu:D (2.5) BS01 PO4 2.4.2.9 GO:0004845 ... Q26998 9628859
    633 1ura:A (2.04) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 8648634
    634 1ura:A (2.04) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 8648634
    635 1ura:B (2.04) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 8648634
    636 1ura:B (2.04) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 8648634
    637 1urb:A (2.14) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 8648634
    638 1urb:A (2.14) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 8648634
    639 1urb:B (2.14) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 8648634
    640 1urb:B (2.14) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 8648634
    641 1usl:A (1.88) BS01 PO4 5.3.1.6 GO:0004751 ... P9WKD7 14687575
    642 1usl:B (1.88) BS01 PO4 5.3.1.6 GO:0004751 ... P9WKD7 14687575
    643 1usl:C (1.88) BS01 PO4 5.3.1.6 GO:0004751 ... P9WKD7 14687575
    644 1usl:D (1.88) BS01 PO4 5.3.1.6 GO:0004751 ... P9WKD7 14687575
    645 1usl:E (1.88) BS01 PO4 5.3.1.6 GO:0004751 ... P9WKD7 14687575
    646 1uu0:A (2.85) BS01 PO4 2.6.1.9 GO:0000105 ... Q9X0D0 15007066
    647 1uu0:B (2.85) BS01 PO4 2.6.1.9 GO:0000105 ... Q9X0D0 15007066
    648 1uu0:C (2.85) BS01 PO4 2.6.1.9 GO:0000105 ... Q9X0D0 15007066
    649 1uu0:D (2.85) BS01 PO4 2.6.1.9 GO:0000105 ... Q9X0D0 15007066
    650 1v2x:A (1.5) BS01 PO4 2.1.1.34 GO:0000049 ... Q5SM16 15062082
    651 1v2x:A (1.5) BS02 PO4 2.1.1.34 GO:0000049 ... Q5SM16 15062082
    652 1vj5:A (2.35) BS02 PO4 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 15096040
    653 1w0j:E (2.2) BS01 PO4 7.1.2.2 GO:0005515 ... P00829 15229653
    654 1w0k:E (2.85) BS01 PO4 7.1.2.2 GO:0005515 ... P00829 15229653
    655 1w0m:A (2.5) BS01 PO4 5.3.1.1 GO:0004807 ... Q8NKN9 15342242
    656 1w0m:B (2.5) BS01 PO4 5.3.1.1 GO:0004807 ... Q8NKN9 15342242
    657 1w0m:C (2.5) BS01 PO4 5.3.1.1 GO:0004807 ... Q8NKN9 15342242
    658 1w0m:D (2.5) BS01 PO4 5.3.1.1 GO:0004807 ... Q8NKN9 15342242
    659 1w0m:E (2.5) BS01 PO4 5.3.1.1 GO:0004807 ... Q8NKN9 15342242
    660 1w0m:F (2.5) BS01 PO4 5.3.1.1 GO:0004807 ... Q8NKN9 15342242
    661 1w0m:G (2.5) BS01 PO4 5.3.1.1 GO:0004807 ... Q8NKN9 15342242
    662 1w0m:H (2.5) BS01 PO4 5.3.1.1 GO:0004807 ... Q8NKN9 15342242
    663 1war:A (2.22) BS03 PO4 3.1.3.2 GO:0003993 ... P13686 15993892
    664 1wbh:B (1.55) BS01 PO4 4.1.2.14
    4.1.3.16    		 GO:0005737 ... P0A955 16403639
    665 1wbh:C (1.55) BS01 PO4 4.1.2.14
    4.1.3.16    		 GO:0005737 ... P0A955 16403639
    666 1wcf:A (1.54) BS03 PO4 3.6.1.1 GO:0000287 ... P9WI55 21821883
    667 1wch:A (1.85) BS01 PO4 3.1.3.48 GO:0004725 ... Q12923 15611135
    668 1wch:A (1.85) BS02 PO4 3.1.3.48 GO:0004725 ... Q12923 15611135
    669 1wgj:A (2.0) BS03 PO4 3.6.1.1 GO:0000287 ... P00817 8994974
    670 1wgj:A (2.0) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 8994974
    671 1wgj:B (2.0) BS03 PO4 3.6.1.1 GO:0000287 ... P00817 8994974
    672 1wgj:B (2.0) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 8994974
    673 1woj:A (1.8) BS01 PO4 3.1.4.37 GO:0004113 ... P09543 15713463
    674 1woq:A (1.8) BS02 PO4 2.7.1.63 GO:0016301 ... Q7WT42 15377666
    675 1woq:A (1.8) BS03 PO4 2.7.1.63 GO:0016301 ... Q7WT42 15377666
    676 1woq:B (1.8) BS02 PO4 2.7.1.63 GO:0016301 ... Q7WT42 15377666
    677 1woq:B (1.8) BS03 PO4 2.7.1.63 GO:0016301 ... Q7WT42 15377666
    678 1wv4:A (2.6) BS01 PO4 1.4.3.5 GO:0004733 ... P0AFI7 15858270
    679 1wzc:A (1.9) BS02 PO4 3.1.3.70 GO:0000287 ... O58690 19018103
    680 1wzc:B (1.9) BS02 PO4 3.1.3.70 GO:0000287 ... O58690 19018103
    681 1x06:A (1.9) BS01 PO4 2.5.1.31 GO:0000287 ... P60472 15788389
    682 1x07:A (2.2) BS01 PO4 2.5.1.31 GO:0000287 ... P60472 15788389
    683 1xjo:A (1.75) BS03 PO4 3.4.11.24 GO:0004177 ... P80561 9048953
    684 1xw3:A (1.65) BS01 PO4 1.8.98.2 GO:0032542 ... Q9BYN0 15952770
    685 1xzw:A (2.5) BS03 PO4 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    686 1xzw:A (2.5) BS04 PO4 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    687 1xzw:B (2.5) BS03 PO4 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    688 1xzw:B (2.5) BS04 PO4 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    689 1y6v:A (1.6) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 15938627
    690 1y6v:B (1.6) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 15938627
    691 1y7a:A (1.77) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 15938627
    692 1y7a:B (1.77) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 15938627
    693 1yba:A (2.24) BS01 PO4 1.1.1.399
    1.1.1.95    		 GO:0004617 ... P0A9T0 15823035
    694 1ygp:A (2.8) BS01 PO4 2.4.1.1 GO:0004645 ... P06738 8703213
    695 1ygp:A (2.8) BS02 PO4 2.4.1.1 GO:0004645 ... P06738 8703213
    696 1ygp:B (2.8) BS01 PO4 2.4.1.1 GO:0004645 ... P06738 8703213
    697 1ygp:B (2.8) BS02 PO4 2.4.1.1 GO:0004645 ... P06738 8703213
    698 1ylh:A (1.7) BS02 PO4 4.1.1.49 GO:0004611 ... A6VKV4 15983413
    699 1yn9:A (1.5) BS01 PO4 3.1.3.48 GO:0003824 ... P24656 15713658
    700 1yn9:A (1.5) BS02 PO4 3.1.3.48 GO:0003824 ... P24656 15713658
    701 1yn9:B (1.5) BS01 PO4 3.1.3.48 GO:0003824 ... P24656 15713658
    702 1yn9:B (1.5) BS02 PO4 3.1.3.48 GO:0003824 ... P24656 15713658
    703 1yn9:C (1.5) BS01 PO4 3.1.3.48 GO:0003824 ... P24656 15713658
    704 1yn9:C (1.5) BS02 PO4 3.1.3.48 GO:0003824 ... P24656 15713658
    705 1ypp:A (2.4) BS03 PO4 3.6.1.1 GO:0000287 ... P00817 8706712
    706 1ypp:A (2.4) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 8706712
    707 1ypp:B (2.4) BS03 PO4 3.6.1.1 GO:0000287 ... P00817 8706712
    708 1ypp:B (2.4) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 8706712
    709 1yqq:A (2.6) BS01 PO4 2.4.2.1 GO:0003824 ... P45563 15808857
    710 1yqq:B (2.6) BS01 PO4 2.4.2.1 GO:0003824 ... P45563 15808857
    711 1yqq:C (2.6) BS01 PO4 2.4.2.1 GO:0003824 ... P45563 15808857
    712 1yqu:A (3.1) BS01 PO4 2.4.2.1 GO:0003824 ... P45563 15808857
    713 1yqu:B (3.1) BS01 PO4 2.4.2.1 GO:0003824 ... P45563 15808857
    714 1yqu:C (3.1) BS01 PO4 2.4.2.1 GO:0003824 ... P45563 15808857
    715 1yrr:A (2.0) BS01 PO4 3.5.1.25 GO:0006040 ... P0AF18 16630633
    716 1yrr:B (2.0) BS01 PO4 3.5.1.25 GO:0006040 ... P0AF18 16630633
    717 1yv5:A (2.0) BS03 PO4 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 16684881
    718 1yv5:A (2.0) BS04 PO4 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 16684881
    719 1ywf:A (1.71) BS01 PO4 ? GO:0004438 ... P96830 16271885
    720 1z1l:A (1.7) BS02 PO4 3.1.4.17 GO:0004114 ... O00408 15938621
    721 1z5g:D (2.0) BS02 PO4 3.1.3.2 GO:0003993 ... Q540U1 17570338
    722 1z7m:B (2.9) BS01 PO4 ? GO:0000105 ... Q02147 16051603
    723 1z7m:D (2.9) BS01 PO4 ? GO:0000105 ... Q02147 16051603
    724 1z7m:E (2.9) BS01 PO4 2.4.2.17 GO:0000105 ... Q02129 16051603
    725 1z7m:G (2.9) BS01 PO4 2.4.2.17 GO:0000105 ... Q02129 16051603
    726 1z7m:G (2.9) BS02 PO4 2.4.2.17 GO:0000105 ... Q02129 16051603
    727 1z7m:H (2.9) BS01 PO4 2.4.2.17 GO:0000105 ... Q02129 16051603
    728 1z7n:G (3.25) BS01 PO4 2.4.2.17 GO:0000105 ... Q02129 16051603
    729 1zal:A (1.89) BS01 PO4 4.1.2.13 GO:0004332 ... P00883 15870069
    730 1zal:A (1.89) BS02 PO4 4.1.2.13 GO:0004332 ... P00883 15870069
    731 1zal:B (1.89) BS01 PO4 4.1.2.13 GO:0004332 ... P00883 15870069
    732 1zal:B (1.89) BS02 PO4 4.1.2.13 GO:0004332 ... P00883 15870069
    733 1zal:C (1.89) BS01 PO4 4.1.2.13 GO:0004332 ... P00883 15870069
    734 1zal:C (1.89) BS02 PO4 4.1.2.13 GO:0004332 ... P00883 15870069
    735 1zal:D (1.89) BS01 PO4 4.1.2.13 GO:0004332 ... P00883 15870069
    736 1zal:D (1.89) BS02 PO4 4.1.2.13 GO:0004332 ... P00883 15870069
    737 1zao:A (1.84) BS03 PO4 2.7.11.1 GO:0004672 ... O30245 15943813
    738 1zc0:A (1.85) BS01 PO4 3.1.3.48 GO:0004725 ... P35236 16226275
    739 1znv:B (2.0) BS01 PO4 3.1.-.- GO:0004519 ... Q47112 16434744
    740 1znv:D (2.0) BS01 PO4 3.1.-.- GO:0004519 ... Q47112 16434744
    741 2a21:A (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 19228070
    742 2a96:A (2.5) BS01 PO4 3.1.3.2 GO:0003993 ... Q8KRU6 17263560
    743 2a96:B (2.5) BS01 PO4 3.1.3.2 GO:0003993 ... Q8KRU6 17263560
    744 2a96:C (2.5) BS01 PO4 3.1.3.2 GO:0003993 ... Q8KRU6 17263560
    745 2a96:D (2.5) BS01 PO4 3.1.3.2 GO:0003993 ... Q8KRU6 17263560
    746 2aae:A (1.8) BS01 PO4 4.6.1.24 GO:0001411 ... P00651 1445870
    747 2abh:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    748 2akm:A (1.92) BS02 PO4 4.2.1.11 GO:0000015 ... P09104 16411755
    749 2akm:B (1.92) BS02 PO4 4.2.1.11 GO:0000015 ... P09104 16411755
    750 2akz:A (1.36) BS02 PO4 4.2.1.11 GO:0000015 ... P09104 16411755
    751 2akz:B (1.36) BS02 PO4 4.2.1.11 GO:0000015 ... P09104 16411755
    752 2anh:A (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    753 2anh:A (2.4) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    754 2anh:B (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    755 2aop:A (1.75) BS01 PO4 1.8.1.2 GO:0004783 ... P17846 9315848
    756 2aro:A (2.1) BS01 PO4 ? GO:0000786 ... P02263 16920041
    757 2aro:B (2.1) BS01 PO4 ? GO:0000786 ... P0C1H3 16920041
    758 2aro:C (2.1) BS01 PO4 ? GO:0000122 ... P84229 16920041
    759 2aro:E (2.1) BS01 PO4 ? GO:0000786 ... P02263 16920041
    760 2ass:B (3.0) BS01 PO4 ? N/A Q13309 16209941
    761 2ass:C (3.0) BS01 PO4 ? GO:0016538 ... P61024 16209941
    762 2ass:C (3.0) BS02 PO4 ? GO:0016538 ... P61024 16209941
    763 2au6:A (1.2) BS01 PO4 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    764 2au7:A (1.05) BS01 PO4 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    765 2au8:A (1.65) BS01 PO4 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    766 2aut:D (2.25) BS02 PO4 3.1.3.2 GO:0003993 ... Q540U1 17570338
    767 2b82:A (1.25) BS02 PO4 3.1.3.2 GO:0000287 ... P0AE22 16330049
    768 2b82:B (1.25) BS02 PO4 3.1.3.2 GO:0000287 ... P0AE22 16330049
    769 2b8j:A (2.033) BS02 PO4 3.1.3.2 GO:0000287 ... P0AE22 16330049
    770 2bif:A (2.4) BS03 PO4 2.7.1.105
    3.1.3.46    		 GO:0003824 ... P25114 9890980
    771 2bif:B (2.4) BS02 PO4 2.7.1.105
    3.1.3.46    		 GO:0003824 ... P25114 9890980
    772 2bif:B (2.4) BS03 PO4 2.7.1.105
    3.1.3.46    		 GO:0003824 ... P25114 9890980
    773 2bj9:B (3.0) BS03 PO4 ? GO:0003677 ... O58316 15826657
    774 2bup:A (1.7) BS01 PO4 3.6.4.10 GO:0005524 ... P19120 9799500
    775 2bwl:A (1.62) BS01 PO4 3.1.27.- GO:0001525 ... P21570 16301790
    776 2bwl:A (1.62) BS02 PO4 3.1.27.- GO:0001525 ... P21570 16301790
    777 2c0a:B (1.55) BS01 PO4 4.1.2.14
    4.1.3.16    		 GO:0005737 ... P0A955 16403639
    778 2c0a:C (1.55) BS01 PO4 4.1.2.14
    4.1.3.16    		 GO:0005737 ... P0A955 16403639
    779 2c1w:A (2.2) BS01 PO4 4.6.1.- GO:0003723 ... Q8JFY9 16895992
    780 2c1w:B (2.2) BS01 PO4 4.6.1.- GO:0003723 ... Q8JFY9 16895992
    781 2c1w:C (2.2) BS01 PO4 4.6.1.- GO:0003723 ... Q8JFY9 16895992
    782 2c4n:A (1.8) BS02 PO4 3.1.3.5 GO:0000287 ... P0AF24 16430214
    783 2c4n:A (1.8) BS03 PO4 3.1.3.5 GO:0000287 ... P0AF24 16430214
    784 2c9b:D (2.75) BS02 PO4 2.5.1.78 GO:0000906 ... P9WHE9 16984393
    785 2c9b:E (2.75) BS03 PO4 2.5.1.78 GO:0000906 ... P9WHE9 16984393
    786 2c9b:H (2.75) BS02 PO4 2.5.1.78 GO:0000906 ... P9WHE9 16984393
    787 2ck3:E (1.95) BS01 PO4 7.1.2.2 GO:0005515 ... P00829 16728506
    788 2cqt:A (2.1) BS02 PO4 2.4.1.20 GO:0003824 ... O66264 16646954
    789 2cqt:B (2.1) BS02 PO4 2.4.1.20 GO:0003824 ... O66264 16646954
    790 2cxn:A (1.4) BS01 PO4 5.3.1.9 GO:0001701 ... P06745 16375918
    791 2cxu:A (1.65) BS01 PO4 5.3.1.9 GO:0001701 ... P06745 16375918
    792 2czh:B (2.7) BS01 PO4 3.1.3.25 GO:0005515 ... O14732 17340635
    793 2czi:A (3.0) BS03 PO4 3.1.3.25 GO:0005515 ... O14732 17340635
    794 2dkc:A (2.2) BS02 PO4 5.4.2.3 GO:0000287 ... Q9P4V2 16651269
    795 2dkc:B (2.2) BS02 PO4 5.4.2.3 GO:0000287 ... Q9P4V2 16651269
    796 2dkd:A (2.1) BS02 PO4 5.4.2.3 GO:0000287 ... Q9P4V2 16651269
    797 2dkd:B (2.1) BS02 PO4 5.4.2.3 GO:0000287 ... Q9P4V2 16651269
    798 2e5a:A (2.1) BS02 PO4 2.3.1.-
    2.3.1.200    		 GO:0005737 ... O46419 17570395
    799 2eqb:C (2.7) BS01 PO4 ? GO:0005085 ... P17065 17488829
    800 2ez2:A (1.85) BS01 PO4 4.1.99.2 GO:0006520 ... P31013 16768450
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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