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BioLiP
Download all results in tab-seperated text for 3495 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1nd6:D (2.4) BS01 PO4 3.1.3.2
    3.1.3.48
    3.1.3.5    		 GO:0003993 ... P15309 12525165
    402 1nel:A (2.6) BS02 PO4 4.2.1.11 GO:0000015 ... P00924 8346189
    403 1ng3:A (2.6) BS01 PO4 1.4.3.19 GO:0005737 ... O31616 12627963
    404 1ng4:B (2.3) BS01 PO4 1.4.3.19 GO:0005737 ... O31616 12627963
    405 1ngb:A (2.18) BS01 PO4 3.6.4.10 GO:0005524 ... P19120 8175707
    406 1ngc:A (2.2) BS01 PO4 3.6.4.10 GO:0005524 ... P19120 8175707
    407 1ngd:A (2.18) BS01 PO4 3.6.4.10 GO:0005524 ... P19120 8175707
    408 1noi:A (2.5) BS01 PO4 2.4.1.1 GO:0000166 ... P00489 8652510
    409 1noi:B (2.5) BS01 PO4 2.4.1.1 GO:0000166 ... P00489 8652510
    410 1noi:C (2.5) BS01 PO4 2.4.1.1 GO:0000166 ... P00489 8652510
    411 1noi:D (2.5) BS01 PO4 2.4.1.1 GO:0000166 ... P00489 8652510
    412 1noj:A (2.4) BS01 PO4 2.4.1.1 GO:0000166 ... P00489 8652510
    413 1noj:A (2.4) BS02 PO4 2.4.1.1 GO:0000166 ... P00489 8652510
    414 1npi:A (1.16) BS01 PO4 ? GO:0005576 ... P15226 12595696
    415 1npi:A (1.16) BS02 PO4 ? GO:0005576 ... P15226 12595696
    416 1nrg:A (1.95) BS01 PO4 1.4.3.5 GO:0004733 ... Q9NVS9 12824491
    417 1nsj:A (2.0) BS01 PO4 5.3.1.24 GO:0000162 ... Q56320 9166771
    418 1nuy:A (1.3) BS05 PO4 3.1.3.11 GO:0005737 ... P00636 12595528
    419 1nuy:A (1.3) BS06 PO4 3.1.3.11 GO:0005737 ... P00636 12595528
    420 1nuz:A (1.9) BS05 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    421 1nuz:A (1.9) BS06 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    422 1nv0:A (1.8) BS05 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    423 1nv0:A (1.8) BS06 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    424 1nv1:A (1.9) BS04 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    425 1nv1:A (1.9) BS05 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    426 1nv2:A (2.1) BS04 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    427 1nv3:A (2.0) BS03 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    428 1nv3:A (2.0) BS04 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    429 1nv4:A (1.9) BS04 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    430 1nv4:A (1.9) BS05 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    431 1nv5:A (1.9) BS04 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    432 1nv5:A (1.9) BS05 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    433 1nv6:A (2.15) BS04 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    434 1nv7:A (2.15) BS03 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    435 1nv7:B (2.15) BS03 PO4 3.1.3.11 GO:0005737 ... P00636 12595529
    436 1nx6:A (2.15) BS01 PO4 1.2.1.11 GO:0004073 ... P44801 14559965
    437 1nx6:A (2.15) BS02 PO4 1.2.1.11 GO:0004073 ... P44801 14559965
    438 1nzy:B (1.8) BS03 PO4 3.8.1.7 GO:0003824 ... A5JTM5 8679561
    439 1o4c:A (1.8) BS01 PO4 2.7.10.2 N/A P12931 14613321
    440 1o90:A (3.1) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    441 1o90:A (3.1) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    442 1o90:B (3.1) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    443 1o92:A (3.19) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    444 1o92:A (3.19) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    445 1o92:B (3.19) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    446 1o93:A (3.49) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    447 1o93:B (3.49) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    448 1o9t:B (2.9) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    449 1oix:A (1.7) BS02 PO4 3.6.5.2 GO:0003924 ... P62491 15837192
    450 1ojr:A (1.35) BS02 PO4 4.1.2.19 GO:0005737 ... P32169 12962479
    451 1ojr:A (1.35) BS03 PO4 4.1.2.19 GO:0005737 ... P32169 12962479
    452 1okh:A (1.75) BS01 PO4 ? GO:0006952 ... P01538 14646070
    453 1okh:B (1.75) BS01 PO4 ? GO:0006952 ... P01538 14646070
    454 1owl:A (1.8) BS01 PO4 4.1.99.3 GO:0000166 ... P05327 15213381
    455 1owl:A (1.8) BS02 PO4 4.1.99.3 GO:0000166 ... P05327 15213381
    456 1owm:A (2.3) BS01 PO4 4.1.99.3 GO:0000166 ... P05327 15213381
    457 1own:A (2.3) BS01 PO4 4.1.99.3 GO:0000166 ... P05327 15213381
    458 1owo:A (2.3) BS01 PO4 4.1.99.3 GO:0000166 ... P05327 15213381
    459 1owp:A (2.3) BS01 PO4 4.1.99.3 GO:0000166 ... P05327 15213381
    460 1oz0:A (2.5) BS01 PO4 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12974624
    461 1oz0:B (2.5) BS02 PO4 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12974624
    462 1ozf:A (2.3) BS01 PO4 2.2.1.6 GO:0000287 ... P27696 14557277
    463 1ozf:B (2.3) BS01 PO4 2.2.1.6 GO:0000287 ... P27696 14557277
    464 1ozg:A (2.3) BS01 PO4 2.2.1.6 GO:0000287 ... P27696 14557277
    465 1ozg:B (2.3) BS01 PO4 2.2.1.6 GO:0000287 ... P27696 14557277
    466 1ozh:A (2.0) BS01 PO4 2.2.1.6 GO:0000287 ... P27696 14557277
    467 1ozh:B (2.0) BS02 PO4 2.2.1.6 GO:0000287 ... P27696 14557277
    468 1ozh:C (2.0) BS01 PO4 2.2.1.6 GO:0000287 ... P27696 14557277
    469 1ozh:D (2.0) BS02 PO4 2.2.1.6 GO:0000287 ... P27696 14557277
    470 1p0c:A (2.2) BS03 PO4 1.1.1.2 GO:0004745 ... O57380 12818203
    471 1p0c:B (2.2) BS03 PO4 1.1.1.2 GO:0004745 ... O57380 12818203
    472 1p0k:A (1.9) BS01 PO4 5.3.3.2 GO:0000287 ... P50740 12798687
    473 1p0k:B (1.9) BS01 PO4 5.3.3.2 GO:0000287 ... P50740 12798687
    474 1p1j:A (1.7) BS01 PO4 5.5.1.4 GO:0004512 ... P11986 12832758
    475 1p1j:B (1.7) BS01 PO4 5.5.1.4 GO:0004512 ... P11986 12832758
    476 1pbp:A (1.9) BS01 PO4 ? GO:0006817 ... P0AG82 7929197
    477 1pc3:A (2.16) BS01 PO4 ? GO:0005515 ... P9WGU1 12842040
    478 1pc3:B (2.16) BS01 PO4 ? GO:0005515 ... P9WGU1 12842040
    479 1pie:A (2.1) BS02 PO4 2.7.1.6 GO:0000287 ... Q9R7D7 12796487
    480 1pii:A (2.0) BS01 PO4 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P00909 1738159
    481 1pii:A (2.0) BS02 PO4 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P00909 1738159
    482 1pk7:A (2.5) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    483 1pk7:B (2.5) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    484 1pk7:C (2.5) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    485 1pk9:A (1.9) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    486 1pk9:B (1.9) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    487 1pk9:C (1.9) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    488 1pke:A (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    489 1pke:B (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    490 1pke:C (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    491 1pnt:A (2.2) BS01 PO4 3.1.3.2
    3.1.3.48    		 GO:0003993 ... P11064 7537084
    492 1pqp:A (2.06) BS01 PO4 1.2.1.11 GO:0004073 ... P44801 15272161
    493 1pr0:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    494 1pr0:B (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    495 1pr0:C (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    496 1pr1:A (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    497 1pr1:B (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    498 1pr1:C (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    499 1pr2:A (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    500 1pr2:B (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    501 1pr2:C (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    502 1pr3:A (2.15) BS01 PO4 1.2.1.11 GO:0004073 ... P44801 15272161
    503 1pr4:A (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    504 1pr4:B (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    505 1pr4:C (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    506 1pr5:A (2.5) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    507 1pr5:B (2.5) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    508 1pr5:C (2.5) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    509 1pr6:A (2.1) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    510 1pr6:B (2.1) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    511 1pr6:C (2.1) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    512 1ptm:A (1.96) BS02 PO4 1.1.1.262 GO:0000287 ... P19624 12896974
    513 1pvw:A (2.45) BS02 PO4 4.1.99.12 GO:0000287 ... Q60364 12904291
    514 1pw7:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    515 1pw7:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    516 1pw7:C (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    517 1q91:A (1.6) BS01 PO4 3.1.3.- GO:0008253 ... Q9NPB1 15044615
    518 1q9d:A (2.35) BS04 PO4 3.1.3.11 GO:0005737 ... P00636 14530289
    519 1q9d:A (2.35) BS05 PO4 3.1.3.11 GO:0005737 ... P00636 14530289
    520 1q9d:B (2.35) BS05 PO4 3.1.3.11 GO:0005737 ... P00636 14530289
    521 1q9d:B (2.35) BS06 PO4 3.1.3.11 GO:0005737 ... P00636 14530289
    522 1qe5:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P81989 10600382
    523 1qe5:B (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P81989 10600382
    524 1qe5:C (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P81989 10600382
    525 1qf4:A (2.2) BS01 PO4 6.3.4.4 GO:0000166 ... P0A7D4 10556888
    526 1qf5:A (2.0) BS01 PO4 6.3.4.4 GO:0000166 ... P0A7D4 10556888
    527 1qfc:A (2.7) BS03 PO4 3.1.3.2 GO:0003993 ... P29288 10388567
    528 1qgx:A (1.6) BS02 PO4 3.1.3.7 GO:0000103 ... P32179 10656801
    529 1qlm:A (2.0) BS01 PO4 3.5.4.27 GO:0005737 ... P94954 10545331
    530 1qlm:A (2.0) BS02 PO4 3.5.4.27 GO:0005737 ... P94954 10545331
    531 1qlm:A (2.0) BS03 PO4 3.5.4.27 GO:0005737 ... P94954 10545331
    532 1qm5:A (2.0) BS05 PO4 2.4.1.1 GO:0004645 ... P00490 10469642
    533 1qm5:B (2.0) BS05 PO4 2.4.1.1 GO:0004645 ... P00490 10469642
    534 1qui:A (1.9) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    535 1quj:A (1.9) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    536 1quk:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    537 1qul:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    538 1r0b:A (2.9) BS02 PO4 2.1.3.2 GO:0004070 ... P0A786 15157075
    539 1r0b:B (2.9) BS02 PO4 2.1.3.2 GO:0004070 ... P0A786 15157075
    540 1r0b:C (2.9) BS02 PO4 2.1.3.2 GO:0004070 ... P0A786 15157075
    541 1r0b:D (2.9) BS02 PO4 2.1.3.2 GO:0004070 ... P0A786 15157075
    542 1r0b:D (2.9) BS03 PO4 2.1.3.2 GO:0004070 ... P0A786 15157075
    543 1r0b:E (2.9) BS02 PO4 2.1.3.2 GO:0004070 ... P0A786 15157075
    544 1r0b:E (2.9) BS03 PO4 2.1.3.2 GO:0004070 ... P0A786 15157075
    545 1r0b:F (2.9) BS02 PO4 2.1.3.2 GO:0004070 ... P0A786 15157075
    546 1r0c:A (2.37) BS01 PO4 2.1.3.2 GO:0004070 ... P0A786 15157076
    547 1r0c:G (2.37) BS01 PO4 2.1.3.2 GO:0004070 ... P0A786 15157076
    548 1r6m:A (2.0) BS01 PO4 2.7.7.56 GO:0000049 ... P50597 14573594
    549 1rkv:A (1.9) BS01 PO4 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    550 1rkv:B (1.9) BS01 PO4 3.1.3.3 GO:0000287 ... Q9I2Y2 14699121
    551 1rn4:A (1.8) BS01 PO4 4.6.1.24 GO:0001411 ... P00651 1314902
    552 1rtw:B (2.35) BS01 PO4 ? GO:0005829 ... Q8U189 15858269
    553 1rtw:C (2.35) BS01 PO4 ? GO:0005829 ... Q8U189 15858269
    554 1rtw:D (2.35) BS01 PO4 ? GO:0005829 ... Q8U189 15858269
    555 1rxc:J (2.35) BS03 PO4 2.4.2.3 GO:0003824 ... P12758 15003451
    556 1ryw:A (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    557 1ryw:B (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    558 1ryw:C (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    559 1ryw:D (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    560 1ryw:E (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    561 1ryw:F (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    562 1ryw:G (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    563 1ryw:H (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    564 1s3x:A (1.84) BS01 PO4 ? GO:0005524 ... P0DMV8 9083109
    565 1shn:A (2.15) BS04 PO4 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    566 1shn:B (2.15) BS04 PO4 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    567 1sj9:B (2.5) BS01 PO4 2.4.2.3 GO:0003824 ... P0A1F6 16511035
    568 1sk8:A (1.65) BS01 PO4 3.1.3.-
    3.1.3.8    		 GO:0003993 ... O00092 15341723
    569 1sk8:A (1.65) BS02 PO4 3.1.3.-
    3.1.3.8    		 GO:0003993 ... O00092 15341723
    570 1sk9:A (1.64) BS01 PO4 3.1.3.-
    3.1.3.8    		 GO:0003993 ... O00092 15341723
    571 1t36:A (2.1) BS03 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282
    572 1t36:C (2.1) BS03 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282
    573 1t36:E (2.1) BS03 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282
    574 1t36:G (2.1) BS03 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 15322282
    575 1t5a:A (2.8) BS03 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 15996096
    576 1t5a:B (2.8) BS03 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 15996096
    577 1t5a:C (2.8) BS03 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 15996096
    578 1t8y:A (3.0) BS01 PO4 3.2.2.4 GO:0003824 ... P0AE12 15296732
    579 1t8y:B (3.0) BS01 PO4 3.2.2.4 GO:0003824 ... P0AE12 15296732
    580 1t8y:C (3.0) BS01 PO4 3.2.2.4 GO:0003824 ... P0AE12 15296732
    581 1t8y:E (3.0) BS01 PO4 3.2.2.4 GO:0003824 ... P0AE12 15296732
    582 1t8y:F (3.0) BS01 PO4 3.2.2.4 GO:0003824 ... P0AE12 15296732
    583 1tcu:A (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... Q9BMI9 16182308
    584 1tcu:B (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... Q9BMI9 16182308
    585 1tcu:C (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... Q9BMI9 16182308
    586 1te6:A (1.8) BS02 PO4 4.2.1.11 GO:0000015 ... P09104 15289101
    587 1tj5:A (2.2) BS02 PO4 3.1.3.24 GO:0000287 ... P74325 15937230
    588 1tj7:B (2.44) BS01 PO4 4.3.2.1 GO:0003824 ... P11447 15502303
    589 1tsz:A (2.75) BS01 PO4 2.1.1.45 GO:0004799 ... P00469 9053905
    590 1tyg:A (3.15) BS01 PO4 2.8.1.10 GO:0005737 ... O31618 15362849
    591 1tyg:C (3.15) BS01 PO4 2.8.1.10 GO:0005737 ... O31618 15362849
    592 1tzy:A (1.9) BS01 PO4 ? GO:0000786 ... P02263 16511091
    593 1tzy:B (1.9) BS01 PO4 ? GO:0000786 ... P0C1H5 16511091
    594 1tzy:C (1.9) BS01 PO4 ? GO:0000122 ... P84229 16511091
    595 1tzy:E (1.9) BS01 PO4 ? GO:0000786 ... P02263 16511091
    596 1u1c:A (2.2) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    597 1u1c:B (2.2) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    598 1u1c:C (2.2) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    599 1u1c:D (2.2) BS02 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    600 1u1c:E (2.2) BS01 PO4 2.4.2.3 GO:0003824 ... P12758 15983408
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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