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BioLiP
Download all results in tab-seperated text for 3495 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3401 8dse:A (1.428) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 36746631
    3402 8dse:B (1.428) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 36746631
    3403 8dsi:A (1.43) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 36746631
    3404 8dsi:B (1.43) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 36746631
    3405 8dtj:A (2.118) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 36746631
    3406 8dtj:B (2.118) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 36746631
    3407 8ec6:A (3.1) BS01 PO4 3.5.1.2 GO:0004359 ... D3Z7P3 37857822
    3408 8ec6:B (3.1) BS01 PO4 3.5.1.2 GO:0004359 ... D3Z7P3 37857822
    3409 8ec6:C (3.1) BS01 PO4 3.5.1.2 GO:0004359 ... D3Z7P3 37857822
    3410 8ec6:D (3.1) BS01 PO4 3.5.1.2 GO:0004359 ... D3Z7P3 37857822
    3411 8ec6:E (3.1) BS01 PO4 3.5.1.2 GO:0004359 ... D3Z7P3 37857822
    3412 8ec6:F (3.1) BS01 PO4 3.5.1.2 GO:0004359 ... D3Z7P3 37857822
    3413 8ec6:G (3.1) BS01 PO4 3.5.1.2 GO:0004359 ... D3Z7P3 37857822
    3414 8ec6:H (3.1) BS01 PO4 3.5.1.2 GO:0004359 ... D3Z7P3 37857822
    3415 8exj:A (2.301) BS02 PO4 3.1.3.48 GO:0004725 ... P18031 37316570
    3416 8exk:A (2.096) BS02 PO4 3.1.3.48 GO:0004725 ... P18031 37316570
    3417 8exm:A (2.349) BS02 PO4 3.1.3.48 GO:0004725 ... P18031 37316570
    3418 8exn:A (2.151) BS02 PO4 3.1.3.48 GO:0004725 ... P18031 37316570
    3419 8f29:D (4.0) BS02 PO4 7.1.2.2 GO:0005515 ... P00830 38316880
    3420 8f9y:A (2.6) BS02 PO4 3.1.3.57
    3.1.3.7    		 GO:0000103 ... Q42546 27432987
    3421 8fvz:A (3.1) BS01 PO4 ? GO:0016020 ... A8N031 N/A
    3422 8fvz:B (3.1) BS01 PO4 ? GO:0016020 ... A8N031 N/A
    3423 8fwy:A (1.54) BS02 PO4 2.4.2.8 GO:0000166 ... Q4DGA2 37418678
    3424 8fwy:B (1.54) BS02 PO4 2.4.2.8 GO:0000166 ... Q4DGA2 37418678
    3425 8fwz:A (1.65) BS02 PO4 2.4.2.8 GO:0000166 ... Q4DGA2 37418678
    3426 8g08:D (2.8) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 37377118
    3427 8g0a:F (2.9) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 37377118
    3428 8g0d:E (2.9) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 37377118
    3429 8g0e:F (2.6) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 37377118
    3430 8jb3:A (1.77382) BS02 PO4 3.1.3.99 GO:0000287 ... Q99312 38362806
    3431 8jfs:A (1.0) BS01 PO4 3.6.1.7 GO:0003998 ... Q9RVU3 37302289
    3432 8jfs:B (1.0) BS01 PO4 3.6.1.7 GO:0003998 ... Q9RVU3 37302289
    3433 8jgp:A (3.02) BS02 PO4 ? GO:0016462 ... Q9RYW9 38682481
    3434 8jgr:A (2.5) BS01 PO4 ? GO:0016462 ... Q9RYW9 38682481
    3435 8jgr:A (2.5) BS02 PO4 ? GO:0016462 ... Q9RYW9 38682481
    3436 8oha:A (2.37) BS01 PO4 1.2.1.-
    1.2.1.12    		 GO:0000166 ... Q72QM3 37409124
    3437 8oha:B (2.37) BS01 PO4 1.2.1.-
    1.2.1.12    		 GO:0000166 ... Q72QM3 37409124
    3438 8oru:BBB (2.23) BS05 PO4 6.5.1.9 GO:0005524 ... O93732 38045033
    3439 8p1x:AAA (2.03) BS01 PO4 N/A GO:0016757 ... N/A 38000019
    3440 8p1x:AAA (2.03) BS02 PO4 N/A GO:0016757 ... N/A 38000019
    3441 8prk:A (1.85) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 9878371
    3442 8prk:B (1.85) BS04 PO4 3.6.1.1 GO:0000287 ... P00817 9878371
    3443 8q1c:A (1.679) BS02 PO4 N/A N/A A0A0A7T4I1 39068257
    3444 8q1c:B (1.679) BS02 PO4 N/A N/A A0A0A7T4I1 39068257
    3445 8qfw:A (2.0) BS02 PO4 3.1.3.16
    3.1.3.74    		 GO:0000287 ... P60487 38856179
    3446 8qfw:B (2.0) BS02 PO4 3.1.3.16
    3.1.3.74    		 GO:0000287 ... P60487 38856179
    3447 8qyw:A (2.746) BS01 PO4 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    3448 8qyw:A (2.746) BS03 PO4 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    3449 8r34:A (2.62) BS01 PO4 ? GO:0005315 ... P39535 38688287
    3450 8r34:B (2.62) BS01 PO4 ? GO:0005315 ... P39535 38688287
    3451 8spx:F (2.95) BS02 PO4 7.1.2.2 GO:0005515 ... P07677 38237595
    3452 8t7j:A (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    3453 8t7j:B (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    3454 8t7j:C (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    3455 8t7j:D (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    3456 8t8u:A (2.01) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    3457 8t8v:A (1.96) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    3458 8t8x:A (2.59) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    3459 8t92:A (2.3) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    3460 8t96:A (2.36) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    3461 8t97:A (2.46) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    3462 8u7j:I (3.02) BS01 PO4 N/A GO:0006520 ... A7WYT1 38782204
    3463 8u7j:K (3.02) BS01 PO4 N/A GO:0006520 ... A7WYT1 38782204
    3464 8u7j:L (3.02) BS01 PO4 N/A GO:0006520 ... A7WYT1 38782204
    3465 8u9e:B (3.02) BS01 PO4 N/A GO:0006520 ... A0A0D1HGG1 38782204
    3466 8uee:F (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    3467 8uee:H (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    3468 8uee:J (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    3469 8uee:K (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    3470 8uee:L (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    3471 8uee:M (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    3472 8v4h:B (2.2) BS02 PO4 ? GO:0000166 ... A0A0U3AP28 38386885
    3473 8w6p:B (1.91) BS01 PO4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    3474 8wgo:A (3.7) BS03 PO4 N/A N/A A0A2U3S0J5 39154050
    3475 8wgo:B (3.7) BS01 PO4 N/A N/A A0A2U3S0J5 39154050
    3476 8x5b:A (2.84) BS01 PO4 N/A N/A Q9UBH6 39169184
    3477 8x5b:A (2.84) BS02 PO4 N/A N/A Q9UBH6 39169184
    3478 8x5b:A (2.84) BS03 PO4 N/A N/A Q9UBH6 39169184
    3479 8x5b:A (2.84) BS04 PO4 N/A N/A Q9UBH6 39169184
    3480 8x5b:F (2.84) BS01 PO4 N/A N/A Q9UBH6 39169184
    3481 8x5b:F (2.84) BS02 PO4 N/A N/A Q9UBH6 39169184
    3482 8x5b:F (2.84) BS03 PO4 N/A N/A Q9UBH6 39169184
    3483 8x5b:F (2.84) BS04 PO4 N/A N/A Q9UBH6 39169184
    3484 8x5f:A (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    3485 8x5f:A (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    3486 8x5f:A (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    3487 8x5f:A (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    3488 8x5f:B (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    3489 8x5f:B (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    3490 8x5f:B (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    3491 8x5f:B (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    3492 9emu:A (1.4) BS02 PO4 N/A N/A K4R812 39097184
    3493 9emu:B (1.4) BS03 PO4 N/A N/A K4R812 39097184
    3494 9emu:C (1.4) BS02 PO4 N/A N/A K4R812 39097184
    3495 9emu:D (1.4) BS03 PO4 N/A N/A K4R812 39097184
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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