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BioLiP
Download all results in tab-seperated text for 3495 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 6ive:B (2.3) BS03 PO4 ? N/A Q5SH51 30895492
    2802 6ive:C (2.3) BS01 PO4 ? N/A Q5SH51 30895492
    2803 6ive:D (2.3) BS02 PO4 ? N/A Q5SH51 30895492
    2804 6ive:D (2.3) BS03 PO4 ? N/A Q5SH51 30895492
    2805 6ive:E (2.3) BS01 PO4 ? N/A Q5SH51 30895492
    2806 6ive:E (2.3) BS03 PO4 ? N/A Q5SH51 30895492
    2807 6ive:F (2.3) BS01 PO4 ? N/A Q5SH51 30895492
    2808 6j61:A (2.5) BS02 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2809 6j61:A (2.5) BS03 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2810 6j61:A (2.5) BS05 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2811 6j61:B (2.5) BS02 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2812 6j61:B (2.5) BS03 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2813 6j61:B (2.5) BS06 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2814 6j61:C (2.5) BS03 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2815 6j61:C (2.5) BS04 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2816 6j61:D (2.5) BS02 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2817 6j61:D (2.5) BS05 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2818 6j61:D (2.5) BS06 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    2819 6jku:A (1.95) BS02 PO4 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    2820 6jku:A (1.95) BS03 PO4 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    2821 6jku:B (1.95) BS02 PO4 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    2822 6jku:B (1.95) BS03 PO4 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    2823 6jku:B (1.95) BS04 PO4 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    2824 6jku:C (1.95) BS02 PO4 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    2825 6jku:D (1.95) BS02 PO4 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    2826 6jku:D (1.95) BS03 PO4 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    2827 6jku:D (1.95) BS04 PO4 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    2828 6jly:C (3.5) BS01 PO4 ? GO:0002183 ... Q9UT76 31048492
    2829 6jly:D (3.5) BS01 PO4 ? GO:0002183 ... Q9UT76 31048492
    2830 6jly:E (3.5) BS01 PO4 ? GO:0002183 ... P56288 31048492
    2831 6jly:E (3.5) BS02 PO4 ? GO:0002183 ... P56288 31048492
    2832 6jly:F (3.5) BS01 PO4 ? GO:0002183 ... P56288 31048492
    2833 6jly:F (3.5) BS02 PO4 ? GO:0002183 ... P56288 31048492
    2834 6jly:G (3.5) BS01 PO4 ? GO:0002183 ... Q09924 31048492
    2835 6jlz:C (3.35) BS01 PO4 ? GO:0002183 ... Q9UT76 31048492
    2836 6jlz:D (3.35) BS01 PO4 ? GO:0002183 ... Q9UT76 31048492
    2837 6jlz:E (3.35) BS01 PO4 ? GO:0002183 ... P56288 31048492
    2838 6jlz:E (3.35) BS02 PO4 ? GO:0002183 ... P56288 31048492
    2839 6jlz:F (3.35) BS01 PO4 ? GO:0002183 ... P56288 31048492
    2840 6jlz:I (3.35) BS01 PO4 ? GO:0002183 ... P56287 31048492
    2841 6jpk:A (2.102) BS01 PO4 2.6.1.1 GO:0004069 ... O42652 31465495
    2842 6jpk:B (2.102) BS01 PO4 2.6.1.1 GO:0004069 ... O42652 31465495
    2843 6k5k:A (2.097) BS01 PO4 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    2844 6k5k:B (2.097) BS01 PO4 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    2845 6k5k:C (2.097) BS02 PO4 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    2846 6k5k:D (2.097) BS02 PO4 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    2847 6k5z:A (2.33) BS04 PO4 ? GO:0000166 ... Q8ZXN7 31693208
    2848 6k5z:B (2.33) BS04 PO4 ? GO:0000166 ... Q8ZXN7 31693208
    2849 6k8p:A (1.965) BS01 PO4 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    2850 6k8p:C (1.965) BS01 PO4 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    2851 6kam:C (2.46) BS04 PO4 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    2852 6kg2:A (2.25) BS03 PO4 1.5.1.15
    3.5.4.9    		 GO:0003824 ... P13995 31638799
    2853 6kg2:A (2.25) BS04 PO4 1.5.1.15
    3.5.4.9    		 GO:0003824 ... P13995 31638799
    2854 6kg2:B (2.25) BS01 PO4 1.5.1.15
    3.5.4.9    		 GO:0003824 ... P13995 31638799
    2855 6kg2:B (2.25) BS04 PO4 1.5.1.15
    3.5.4.9    		 GO:0003824 ... P13995 31638799
    2856 6knh:A (1.76) BS01 PO4 ? GO:0003824 ... A0A0H3JPF2 31634470
    2857 6knh:B (1.76) BS01 PO4 ? GO:0003824 ... A0A0H3JPF2 31634470
    2858 6knh:C (1.76) BS01 PO4 ? GO:0003824 ... A0A0H3JPF2 31634470
    2859 6knk:B (2.3) BS02 PO4 ? GO:0003824 ... A0A0H3JPF2 31634470
    2860 6knk:C (2.3) BS01 PO4 ? GO:0003824 ... A0A0H3JPF2 31634470
    2861 6l1q:A (2.2) BS02 PO4 ? GO:0000166 ... B7J5E4 31848241
    2862 6l1q:A (2.2) BS03 PO4 ? GO:0000166 ... B7J5E4 31848241
    2863 6l1q:B (2.2) BS02 PO4 ? GO:0000166 ... B7J5E4 31848241
    2864 6l1q:C (2.2) BS02 PO4 ? GO:0000166 ... B7J5E4 31848241
    2865 6l85:A (2.302) BS01 PO4 ? GO:0005315 ... Q9WY99 32821837
    2866 6l85:B (2.302) BS01 PO4 ? GO:0005315 ... Q9WY99 32821837
    2867 6lcq:A (1.62) BS01 PO4 ? GO:0005576 ... Q6K209 32192842
    2868 6lk4:A (2.503) BS02 PO4 1.1.1.205 GO:0003824 ... Q57ZS7 32296055
    2869 6m6y:A (1.5) BS03 PO4 3.6.1.58
    3.6.1.61
    3.6.1.69    		 GO:0006260 ... A0QUZ2 33021500
    2870 6mfs:A (2.85) BS02 PO4 ? GO:0005856 ... P26039 30254158
    2871 6mv6:A (1.5) BS01 PO4 3.1.27.- GO:0003676 ... Q93091 31909602
    2872 6n14:A (1.52169) BS01 PO4 3.5.2.6 GO:0005576 ... P9WKD3 31269656
    2873 6n14:A (1.52169) BS02 PO4 3.5.2.6 GO:0005576 ... P9WKD3 31269656
    2874 6n2y:E (3.0) BS01 PO4 7.1.2.2 GO:0005524 ... A0A0M4U1P9 30724163
    2875 6n2z:F (3.0) BS01 PO4 7.1.2.2 GO:0005524 ... A0A0M4U1P9 30724163
    2876 6n30:D (3.2) BS01 PO4 7.1.2.2 GO:0005524 ... A0A0M4U1P9 30724163
    2877 6n7y:F (2.0) BS02 PO4 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 31577901
    2878 6nff:A (2.0) BS02 PO4 3.4.14.11 GO:0004177 ... Q59485 31584010
    2879 6nff:A (2.0) BS03 PO4 3.4.14.11 GO:0004177 ... Q59485 31584010
    2880 6npw:B (2.486) BS01 PO4 3.1.3.16 GO:0004721 ... Q9VWE4 30971428
    2881 6oag:F (2.3) BS03 PO4 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 31577901
    2882 6oah:F (2.2) BS02 PO4 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 31577901
    2883 6oc1:A (2.7) BS02 PO4 1.3.5.2 GO:0004151 ... Q02127 31734178
    2884 6ok4:A (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... P0CE13 31930578
    2885 6ok4:A (2.4) BS03 PO4 1.2.1.12 GO:0000166 ... P0CE13 31930578
    2886 6ok4:B (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... P0CE13 31930578
    2887 6ok4:C (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... P0CE13 31930578
    2888 6ok4:C (2.4) BS03 PO4 1.2.1.12 GO:0000166 ... P0CE13 31930578
    2889 6ok4:D (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... P0CE13 31930578
    2890 6p2u:A (2.0) BS02 PO4 ? GO:0005524 ... P38646 31177526
    2891 6p52:A (1.83) BS01 PO4 3.4.16.4 GO:0008658 ... P08149 31362987
    2892 6p52:A (1.83) BS02 PO4 3.4.16.4 GO:0008658 ... P08149 31362987
    2893 6p53:B (1.92) BS01 PO4 3.4.16.4 GO:0008658 ... P08149 31362987
    2894 6p55:A (1.74) BS02 PO4 3.4.16.4 GO:0008658 ... P08149 31362987
    2895 6p55:A (1.74) BS03 PO4 3.4.16.4 GO:0008658 ... P08149 31362987
    2896 6p55:B (1.74) BS02 PO4 3.4.16.4 GO:0008658 ... P08149 31362987
    2897 6pbj:A (1.9) BS01 PO4 2.5.1.54 GO:0003849 ... O53512 32217694
    2898 6pbj:B (1.9) BS01 PO4 2.5.1.54 GO:0003849 ... O53512 32217694
    2899 6pc1:A (2.76) BS02 PO4 ? GO:0016462 ... B5ZA44 31679177
    2900 6pc1:B (2.76) BS03 PO4 ? GO:0016462 ... B5ZA44 31679177
    2901 6pc1:C (2.76) BS02 PO4 ? GO:0016462 ... B5ZA44 31679177
    2902 6pc1:D (2.76) BS03 PO4 ? GO:0016462 ... B5ZA44 31679177
    2903 6pc2:A (2.9) BS01 PO4 ? GO:0016462 ... B5ZA44 31679177
    2904 6pc2:A (2.9) BS02 PO4 ? GO:0016462 ... B5ZA44 31679177
    2905 6pc2:B (2.9) BS03 PO4 ? GO:0016462 ... B5ZA44 31679177
    2906 6pc2:B (2.9) BS04 PO4 ? GO:0016462 ... B5ZA44 31679177
    2907 6pc3:A (2.1) BS02 PO4 ? GO:0016462 ... B5ZA44 31679177
    2908 6pc3:B (2.1) BS03 PO4 ? GO:0016462 ... B5ZA44 31679177
    2909 6ppz:A (2.4) BS03 PO4 2.5.1.56 GO:0016051 ... H2VFG5 31549502
    2910 6pt8:A (1.4) BS03 PO4 ? GO:0008939 ... Q58993 36229494
    2911 6pt8:B (1.4) BS03 PO4 ? GO:0008939 ... Q58993 36229494
    2912 6pti:A (1.7) BS01 PO4 ? GO:0004867 ... P00974 2448484
    2913 6px2:A (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... A0A3F2YLZ0 35423531
    2914 6px2:B (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... A0A3F2YLZ0 35423531
    2915 6px2:C (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... A0A3F2YLZ0 35423531
    2916 6px2:D (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... A0A3F2YLZ0 35423531
    2917 6px2:E (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... A0A3F2YLZ0 35423531
    2918 6px2:F (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... A0A3F2YLZ0 35423531
    2919 6px2:G (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... A0A3F2YLZ0 35423531
    2920 6px2:H (2.4) BS02 PO4 1.2.1.12 GO:0000166 ... A0A3F2YLZ0 35423531
    2921 6pyp:A (1.95) BS02 PO4 1.1.1.8 GO:0004368 ... P21695 33042609
    2922 6qlg:C (2.15) BS05 PO4 2.5.1.129 GO:0000166 ... A3F715 31142738
    2923 6qlv:D (2.391) BS03 PO4 2.5.1.129 GO:0000166 ... A0A072ZCW8 31142738
    2924 6qlv:E (2.391) BS02 PO4 2.5.1.129 GO:0000166 ... A0A072ZCW8 31142738
    2925 6qlv:F (2.391) BS02 PO4 2.5.1.129 GO:0000166 ... A0A072ZCW8 31142738
    2926 6qva:A (2.05) BS03 PO4 ? N/A Q8KE09 31133615
    2927 6r3v:B (1.75) BS03 PO4 3.6.5.2 GO:0000902 ... P61586 31038818
    2928 6ris:A (2.1) BS03 PO4 ? GO:0005737 ... P84308 31811022
    2929 6ris:A (2.1) BS04 PO4 ? GO:0005737 ... P84308 31811022
    2930 6ris:B (2.1) BS02 PO4 ? GO:0005737 ... P84253 31811022
    2931 6rj4:B (1.9) BS02 PO4 ? GO:0005737 ... P84253 31811022
    2932 6rj4:B (1.9) BS03 PO4 ? GO:0005737 ... P84253 31811022
    2933 6rj4:B (1.9) BS04 PO4 ? GO:0005737 ... P84253 31811022
    2934 6rj4:D (1.9) BS02 PO4 ? GO:0005737 ... P84253 31811022
    2935 6rj4:F (1.9) BS02 PO4 ? GO:0005737 ... P84253 31811022
    2936 6rj4:F (1.9) BS03 PO4 ? GO:0005737 ... P84253 31811022
    2937 6rke:B (1.7) BS04 PO4 ? GO:0005737 ... P84253 31811022
    2938 6rke:D (1.7) BS04 PO4 ? GO:0005737 ... P84253 31811022
    2939 6rke:F (1.7) BS05 PO4 ? GO:0005737 ... P84253 31811022
    2940 6rke:H (1.7) BS04 PO4 ? GO:0005737 ... P84253 31811022
    2941 6rke:J (1.7) BS04 PO4 ? GO:0005737 ... P84253 31811022
    2942 6rke:L (1.7) BS04 PO4 ? GO:0005737 ... P84253 31811022
    2943 6rtz:A (2.87) BS01 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 31495713
    2944 6rtz:A (2.87) BS02 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 31495713
    2945 6ru0:A (2.648) BS01 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 31495713
    2946 6ru0:C (2.648) BS01 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 31495713
    2947 6ru0:E (2.648) BS01 PO4 4.3.2.10 GO:0000105 ... Q9X0C6 31495713
    2948 6rxe:B (1.84) BS02 PO4 ? N/A B7GTV0 33454010
    2949 6rxg:A (1.71) BS01 PO4 ? N/A B7GTV0 33454010
    2950 6rxg:B (1.71) BS01 PO4 ? N/A B7GTV0 33454010
    2951 6s9u:A (2.05) BS01 PO4 N/A N/A N/A 31405215
    2952 6sls:A (2.32) BS01 PO4 1.14.19.59 GO:0000166 ... A1E280 31589794
    2953 6sls:B (2.32) BS01 PO4 1.14.19.59 GO:0000166 ... A1E280 31589794
    2954 6sls:B (2.32) BS02 PO4 1.14.19.59 GO:0000166 ... A1E280 31589794
    2955 6slt:A (2.7) BS01 PO4 1.14.19.59 GO:0000166 ... A1E280 31589794
    2956 6slt:A (2.7) BS02 PO4 1.14.19.59 GO:0000166 ... A1E280 31589794
    2957 6slt:B (2.7) BS01 PO4 1.14.19.59 GO:0000166 ... A1E280 31589794
    2958 6t23:A (3.1) BS02 PO4 3.6.4.- GO:0000287 ... P68135 32084355
    2959 6t23:B (3.1) BS03 PO4 3.6.4.- GO:0000287 ... P68135 32084355
    2960 6t23:C (3.1) BS03 PO4 3.6.4.- GO:0000287 ... P68135 32084355
    2961 6t23:D (3.1) BS03 PO4 3.6.4.- GO:0000287 ... P68135 32084355
    2962 6t23:E (3.1) BS03 PO4 3.6.4.- GO:0000287 ... P68135 32084355
    2963 6t26:A (2.265) BS04 PO4 ? GO:0004035 ... Q93P54 33102813
    2964 6t26:B (2.265) BS04 PO4 ? GO:0004035 ... Q93P54 33102813
    2965 6tzo:A (1.69) BS02 PO4 6.5.1.3 GO:0003972 ... P43075 31722405
    2966 6tzx:A (1.529) BS02 PO4 6.5.1.3 GO:0003972 ... P43075 31722405
    2967 6u00:B (1.981) BS01 PO4 6.5.1.3 GO:0003972 ... P43075 31722405
    2968 6u05:A (1.948) BS02 PO4 6.5.1.3 GO:0003972 ... P43075 31722405
    2969 6u7a:A (2.22) BS02 PO4 2.6.1.1 GO:0004069 ... O69689 32327655
    2970 6u7a:C (2.22) BS03 PO4 2.6.1.1 GO:0004069 ... O69689 32327655
    2971 6u7a:G (2.22) BS03 PO4 2.6.1.1 GO:0004069 ... O69689 32327655
    2972 6u7a:G (2.22) BS04 PO4 2.6.1.1 GO:0004069 ... O69689 32327655
    2973 6wm5:A (1.961) BS01 PO4 ?
    2.7.8.-    		 GO:0008654 ... O27985
    U5WZP7    		 32389689
    2974 6wp4:A (1.9) BS01 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 33453989
    2975 6wp4:A (1.9) BS02 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 33453989
    2976 6wp4:B (1.9) BS01 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 33453989
    2977 6wp4:B (1.9) BS02 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 33453989
    2978 6wp4:C (1.9) BS01 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 33453989
    2979 6wp4:C (1.9) BS02 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 33453989
    2980 6wp4:D (1.9) BS01 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 33453989
    2981 6wp4:D (1.9) BS02 PO4 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 33453989
    2982 6x1o:A (2.094) BS05 PO4 1.2.7.5 GO:0009055 ... I6V2C3 36269456
    2983 6x1o:B (2.094) BS05 PO4 ? GO:0016491 ... I6U881 36269456
    2984 6x1o:C (2.094) BS05 PO4 1.2.7.5 GO:0009055 ... I6V2C3 36269456
    2985 6x6u:A (1.944) BS04 PO4 1.2.7.5 GO:0009055 ... I6V2C3 36269456
    2986 6x6u:A (1.944) BS05 PO4 1.2.7.5 GO:0009055 ... I6V2C3 36269456
    2987 6x6u:A (1.944) BS06 PO4 1.2.7.5 GO:0009055 ... I6V2C3 36269456
    2988 6x6u:B (1.944) BS01 PO4 ? GO:0016491 ... I6U881 36269456
    2989 6x6u:B (1.944) BS06 PO4 ? GO:0016491 ... I6U881 36269456
    2990 6x6u:C (1.944) BS04 PO4 1.2.7.5 GO:0009055 ... I6V2C3 36269456
    2991 6x6u:D (1.944) BS01 PO4 ? GO:0016491 ... I6U881 36269456
    2992 6x72:A (2.19) BS03 PO4 2.7.7.- GO:0003684 ... P12689 32999062
    2993 6x72:A (2.19) BS04 PO4 2.7.7.- GO:0003684 ... P12689 32999062
    2994 6x73:A (2.05) BS04 PO4 2.7.7.- GO:0003684 ... P12689 32999062
    2995 6xmh:A (1.95) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    2996 6xmh:A (1.95) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    2997 6xmh:B (1.95) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    2998 6xmh:B (1.95) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    2999 6xml:A (1.88) BS01 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    3000 6xml:A (1.88) BS02 PO4 4.1.2.13 GO:0003723 ... P04075 34734672
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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