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BioLiP
Download all results in tab-seperated text for 3495 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 5uxm:A (1.54) BS04 PO4 2.5.1.54 GO:0003849 ... Q9I000 29608284
    2602 5uxn:A (2.2) BS01 PO4 2.5.1.54 GO:0003849 ... Q9I000 29608284
    2603 5uxn:A (2.2) BS02 PO4 2.5.1.54 GO:0003849 ... Q9I000 29608284
    2604 5v2l:A (2.1) BS02 PO4 4.1.1.33 GO:0004163 ... Q837E0 29025876
    2605 5v8c:A (2.51) BS02 PO4 N/A N/A N/A 30782654
    2606 5vjv:A (1.95) BS01 PO4 3.1.3.48 GO:0004721 ... Q9SR62 29615518
    2607 5w2h:A (1.9) BS03 PO4 2.7.1.140
    2.7.1.151
    2.7.1.153    		 GO:0016301 ... Q8NFU5 28882892
    2608 5w7a:B (2.3) BS04 PO4 3.1.1.77 GO:0016788 ... O18823 29343645
    2609 5w7b:C (1.9) BS04 PO4 3.1.1.77 GO:0016788 ... O18823 29343645
    2610 5w7b:D (1.9) BS04 PO4 3.1.1.77 GO:0016788 ... O18823 29343645
    2611 5wrp:A (2.85) BS01 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2612 5wrp:B (2.85) BS01 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2613 5wrp:C (2.85) BS01 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2614 5wrp:D (2.85) BS01 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2615 5wru:B (3.193) BS01 PO4 3.6.1.1 GO:0000287 ... O77392 28701714
    2616 5ws9:A (1.9) BS05 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2617 5ws9:B (1.9) BS05 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2618 5ws9:C (1.9) BS05 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2619 5ws9:D (1.9) BS05 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2620 5wsa:A (2.85) BS04 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2621 5wsa:B (2.85) BS04 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2622 5wsa:C (2.85) BS03 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2623 5wsa:D (2.85) BS03 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2624 5wsb:C (2.25) BS05 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2625 5wsc:C (2.4) BS05 PO4 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    2626 5xai:A (2.0) BS01 PO4 2.7.4.9 GO:0004798 ... O67099 28627020
    2627 5xai:B (2.0) BS01 PO4 2.7.4.9 GO:0004798 ... O67099 28627020
    2628 5xb5:A (2.23) BS01 PO4 2.7.4.9 GO:0004798 ... O67099 28627020
    2629 5xd5:B (1.75) BS02 PO4 3.6.1.58
    3.6.1.61
    3.6.1.69    		 GO:0006260 ... A0QUZ2 28705712
    2630 5xj6:A (2.37) BS02 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    2631 5xj7:A (1.772) BS08 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    2632 5xj8:A (2.41) BS01 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    2633 5xj8:B (2.41) BS01 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    2634 5xj9:A (1.83) BS01 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    2635 5xj9:A (1.83) BS02 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    2636 5xj9:A (1.83) BS03 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    2637 5xj9:A (1.83) BS04 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    2638 5xj9:A (1.83) BS05 PO4 2.3.1.275 GO:0005886 ... O66905 29167463
    2639 5xx1:B (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    2640 5xx1:C (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    2641 5xx1:C (3.1) BS02 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    2642 5xx1:D (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    2643 5xx1:E (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    2644 5xx1:F (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    2645 5xx1:G (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    2646 5xx1:H (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    2647 5xx1:I (3.1) BS01 PO4 4.1.1.19 GO:0003824 ... Q8Z1P1 28694189
    2648 5y78:A (2.1) BS01 PO4 ? N/A B5AJT1 28970497
    2649 5y78:B (2.1) BS01 PO4 ? N/A B5AJT1 28970497
    2650 5y9a:A (1.1) BS02 PO4 3.1.1.29 GO:0004045 ... D0C9L6 29301982
    2651 5ygr:A (2.5) BS01 PO4 4.3.1.15 GO:0008838 ... P40817 29294403
    2652 5ygr:A (2.5) BS02 PO4 4.3.1.15 GO:0008838 ... P40817 29294403
    2653 5ygr:B (2.5) BS01 PO4 4.3.1.15 GO:0008838 ... P40817 29294403
    2654 5ygr:C (2.5) BS01 PO4 4.3.1.15 GO:0008838 ... P40817 29294403
    2655 5ygr:C (2.5) BS02 PO4 4.3.1.15 GO:0008838 ... P40817 29294403
    2656 5ygr:D (2.5) BS01 PO4 4.3.1.15 GO:0008838 ... P40817 29294403
    2657 5ygr:D (2.5) BS02 PO4 4.3.1.15 GO:0008838 ... P40817 29294403
    2658 5yhi:A (2.85) BS01 PO4 ? GO:0003824 ... P32157 29459651
    2659 5yhi:B (2.85) BS01 PO4 ? GO:0003824 ... P32157 29459651
    2660 5yht:A (2.87) BS04 PO4 3.1.3.15 GO:0000105 ... P95189 29752410
    2661 5yht:B (2.87) BS02 PO4 3.1.3.15 GO:0000105 ... P95189 29752410
    2662 5yjj:A (2.2) BS01 PO4 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    2663 5yjj:B (2.2) BS01 PO4 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    2664 5yjj:C (2.2) BS01 PO4 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    2665 5yjj:D (2.2) BS01 PO4 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    2666 5yjj:E (2.2) BS01 PO4 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    2667 5yjj:F (2.2) BS01 PO4 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    2668 5yk7:C (3.799) BS01 PO4 ? GO:0007005 ... C5DRQ1 29078410
    2669 5yv0:F (2.09) BS05 PO4 2.7.7.7 GO:0000287 ... Q47155 29850882
    2670 5yv0:F (2.09) BS06 PO4 2.7.7.7 GO:0000287 ... Q47155 29850882
    2671 5yv1:F (2.09) BS05 PO4 2.7.7.7 GO:0000287 ... Q47155 29850882
    2672 5yv1:F (2.09) BS06 PO4 2.7.7.7 GO:0000287 ... Q47155 29850882
    2673 5yv2:A (1.9) BS06 PO4 2.7.7.7 GO:0000287 ... Q47155 29850882
    2674 5yv2:A (1.9) BS07 PO4 2.7.7.7 GO:0000287 ... Q47155 29850882
    2675 5yv2:F (1.9) BS05 PO4 2.7.7.7 GO:0000287 ... Q47155 29850882
    2676 5zlv:F (2.35) BS05 PO4 2.7.7.7 GO:0000287 ... Q47155 29850882
    2677 5zlv:F (2.35) BS06 PO4 2.7.7.7 GO:0000287 ... Q47155 29850882
    2678 5zme:A (3.603) BS01 PO4 3.6.-.- GO:0005524 ... A8JGB0 30891827
    2679 5zon:A (1.94) BS03 PO4 3.1.3.15 GO:0000105 ... P95189 29752410
    2680 5zon:C (1.94) BS03 PO4 3.1.3.15 GO:0000105 ... P95189 29752410
    2681 5zsn:B (2.4) BS03 PO4 ? GO:0002224 ... B3Y653 30566863
    2682 5zw9:A (2.6) BS01 PO4 2.7.1.35 GO:0000287 ... A0A0F7J8S0 31116912
    2683 6afs:A (2.299) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2684 6afs:A (2.299) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2685 6afs:B (2.299) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2686 6afs:B (2.299) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2687 6aft:A (2.492) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2688 6aft:A (2.492) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2689 6aft:B (2.492) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2690 6aft:B (2.492) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2691 6afu:A (2.798) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2692 6afu:A (2.798) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2693 6afu:B (2.798) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2694 6afu:B (2.798) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2695 6afv:A (2.701) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2696 6afv:A (2.701) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2697 6afv:B (2.701) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2698 6afw:A (2.185) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2699 6afw:A (2.185) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2700 6afw:B (2.185) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2701 6afw:B (2.185) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2702 6afx:A (2.301) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2703 6afx:A (2.301) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2704 6afx:B (2.301) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2705 6afx:B (2.301) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2706 6afy:A (2.401) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2707 6afy:A (2.401) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2708 6afy:B (2.401) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2709 6afy:B (2.401) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2710 6afz:A (2.483) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2711 6afz:A (2.483) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2712 6afz:B (2.483) BS01 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2713 6afz:B (2.483) BS02 PO4 7.1.3.1 GO:0004427 ... P21616 30878480
    2714 6asv:A (2.21) BS01 PO4 2.7.6.1 GO:0000287 ... P0A717 30646888
    2715 6asv:A (2.21) BS02 PO4 2.7.6.1 GO:0000287 ... P0A717 30646888
    2716 6asv:B (2.21) BS01 PO4 2.7.6.1 GO:0000287 ... P0A717 30646888
    2717 6asv:B (2.21) BS02 PO4 2.7.6.1 GO:0000287 ... P0A717 30646888
    2718 6asv:C (2.21) BS01 PO4 2.7.6.1 GO:0000287 ... P0A717 30646888
    2719 6asv:C (2.21) BS02 PO4 2.7.6.1 GO:0000287 ... P0A717 30646888
    2720 6b55:G (2.5) BS01 PO4 ? GO:0006952 ... Q8GTM0 29773800
    2721 6b9v:A (1.88) BS03 PO4 ? GO:0046872 ... Q1INB9 29229761
    2722 6b9v:B (1.88) BS03 PO4 ? GO:0046872 ... Q1INB9 29229761
    2723 6c36:A (1.9) BS03 PO4 ? GO:0003677 ... I7GAS0 29635474
    2724 6cgk:A (1.668) BS01 PO4 ? N/A Q5ZWI4 29976756
    2725 6cgq:B (2.019) BS01 PO4 4.2.3.1 GO:0003941 ... A8HUA2 30830751
    2726 6cgy:A (1.65) BS04 PO4 3.1.1.81 N/A T0BMH6 30050039
    2727 6cgy:H (1.65) BS04 PO4 3.1.1.81 N/A T0BMH6 30050039
    2728 6cgy:L (1.65) BS03 PO4 3.1.1.81 N/A T0BMH6 30050039
    2729 6cq2:A (3.004) BS06 PO4 5.6.2.1 GO:0003677 ... P9WG49 29905859
    2730 6cza:A (1.71) BS04 PO4 1.20.99.1 GO:0016491 ... Q7WTU0 30104376
    2731 6cza:C (1.71) BS04 PO4 1.20.99.1 GO:0016491 ... Q7WTU0 30104376
    2732 6djn:A (3.1) BS02 PO4 3.6.4.- GO:0001725 ... P68139 30760599
    2733 6djn:B (3.1) BS02 PO4 3.6.4.- GO:0001725 ... P68139 30760599
    2734 6djn:C (3.1) BS02 PO4 3.6.4.- GO:0001725 ... P68139 30760599
    2735 6dnb:A (1.7) BS01 PO4 2.6.1.1
    2.6.1.3    		 GO:0004069 ... P17174 30365304
    2736 6dw7:D (2.5) BS06 PO4 3.1.5.- N/A Q9Y3Z3 30305425
    2737 6dwd:C (1.7) BS07 PO4 3.1.5.- N/A Q9Y3Z3 30305425
    2738 6dyz:A (1.62) BS01 PO4 2.4.2.28 GO:0003824 ... Q13126 30860833
    2739 6dz0:A (1.62) BS01 PO4 2.4.2.28 GO:0003824 ... Q13126 30860833
    2740 6e07:B (2.6) BS02 PO4 1.1.1.49 GO:0004345 ... P11413 30279493
    2741 6e07:F (2.6) BS02 PO4 1.1.1.49 GO:0004345 ... P11413 30279493
    2742 6e07:Q (2.6) BS02 PO4 1.1.1.49 GO:0004345 ... P11413 30279493
    2743 6e07:T (2.6) BS02 PO4 1.1.1.49 GO:0004345 ... P11413 30279493
    2744 6e07:W (2.6) BS02 PO4 1.1.1.49 GO:0004345 ... P11413 30279493
    2745 6e8z:A (2.1) BS02 PO4 1.1.1.8 GO:0004368 ... P21695 30640445
    2746 6e8z:B (2.1) BS02 PO4 1.1.1.8 GO:0004368 ... P21695 30640445
    2747 6e90:C (2.05) BS02 PO4 1.1.1.8 GO:0004368 ... P21695 30640445
    2748 6e90:D (2.05) BS01 PO4 1.1.1.8 GO:0004368 ... P21695 30640445
    2749 6eia:A (2.0) BS01 PO4 ? GO:0005886 ... Q5M4H8 29429879
    2750 6eia:A (2.0) BS02 PO4 ? GO:0005886 ... Q5M4H8 29429879
    2751 6eia:A (2.0) BS03 PO4 ? GO:0005886 ... Q5M4H8 29429879
    2752 6evk:A (2.9) BS03 PO4 ? GO:0003723 ... H6QM92 29202182
    2753 6evk:A (2.9) BS04 PO4 ? GO:0003723 ... H6QM92 29202182
    2754 6evk:A (2.9) BS05 PO4 ? GO:0003723 ... H6QM92 29202182
    2755 6evk:A (2.9) BS06 PO4 ? GO:0003723 ... H6QM92 29202182
    2756 6evk:B (2.9) BS03 PO4 2.7.7.48 GO:0000166 ... H6QM91 29202182
    2757 6evk:B (2.9) BS04 PO4 2.7.7.48 GO:0000166 ... H6QM91 29202182
    2758 6evk:B (2.9) BS05 PO4 2.7.7.48 GO:0000166 ... H6QM91 29202182
    2759 6evk:B (2.9) BS06 PO4 2.7.7.48 GO:0000166 ... H6QM91 29202182
    2760 6evk:C (2.9) BS03 PO4 ? GO:0003723 ... H6QM90 29202182
    2761 6f1p:A (1.12) BS01 PO4 3.2.1.17 GO:0003796 ... P00698 29717719
    2762 6f2t:A (2.4) BS01 PO4 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    2763 6f2t:B (2.4) BS01 PO4 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    2764 6f4d:A (2.0) BS03 PO4 2.5.1.72 GO:0005737 ... Q9X1X7 29641168
    2765 6f4d:A (2.0) BS04 PO4 2.5.1.72 GO:0005737 ... Q9X1X7 29641168
    2766 6f4x:A (1.694) BS02 PO4 2.4.2.1 GO:0003824 ... P56463 29430816
    2767 6f4x:C (1.694) BS01 PO4 2.4.2.1 GO:0003824 ... P56463 29430816
    2768 6f4x:E (1.694) BS02 PO4 2.4.2.1 GO:0003824 ... P56463 29430816
    2769 6fhk:A (1.657) BS02 PO4 ? GO:0005524 ... P0DMV8 30108182
    2770 6fhk:B (1.657) BS02 PO4 ? GO:0005524 ... P0DMV8 30108182
    2771 6fhl:A (3.3) BS02 PO4 3.6.4.- GO:0000287 ... P68135 29867215
    2772 6fhl:B (3.3) BS02 PO4 3.6.4.- GO:0000287 ... P68135 29867215
    2773 6fhl:C (3.3) BS02 PO4 3.6.4.- GO:0000287 ... P68135 29867215
    2774 6fhl:D (3.3) BS02 PO4 3.6.4.- GO:0000287 ... P68135 29867215
    2775 6fhl:E (3.3) BS02 PO4 3.6.4.- GO:0000287 ... P68135 29867215
    2776 6foc:E (4.0) BS01 PO4 7.1.2.2 GO:0005524 ... A0R200 30683723
    2777 6fw5:A (2.75) BS01 PO4 3.1.2.- GO:0006629 ... P9WQD4 30292819
    2778 6fw5:B (2.75) BS01 PO4 3.1.2.- GO:0006629 ... P9WQD4 30292819
    2779 6fw5:C (2.75) BS01 PO4 3.1.2.- GO:0006629 ... P9WQD4 30292819
    2780 6fw5:D (2.75) BS01 PO4 3.1.2.- GO:0006629 ... P9WQD4 30292819
    2781 6git:A (1.418) BS03 PO4 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    2782 6git:A (1.418) BS04 PO4 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    2783 6giz:A (1.54) BS03 PO4 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    2784 6giz:A (1.54) BS04 PO4 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    2785 6gj2:A (1.68) BS03 PO4 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    2786 6gja:A (1.5) BS03 PO4 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    2787 6gua:A (1.95) BS03 PO4 4.1.2.- GO:0016829 ... Q9CFH4 31059775
    2788 6gua:D (1.95) BS02 PO4 4.1.2.- GO:0016829 ... Q9CFH4 31059775
    2789 6gua:E (1.95) BS03 PO4 4.1.2.- GO:0016829 ... Q9CFH4 31059775
    2790 6gua:F (1.95) BS02 PO4 4.1.2.- GO:0016829 ... Q9CFH4 31059775
    2791 6gua:G (1.95) BS03 PO4 4.1.2.- GO:0016829 ... Q9CFH4 31059775
    2792 6gx4:B (1.9) BS04 PO4 ? GO:0005737 ... P84253 30367742
    2793 6hgp:A (1.7) BS01 PO4 2.4.2.7 GO:0002055 ... P07741 31160323
    2794 6hvj:A (2.28) BS03 PO4 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 30378281
    2795 6hwl:B (2.148) BS03 PO4 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    2796 6ibz:A (2.44) BS01 PO4 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 30626557
    2797 6iv5:A (1.749) BS01 PO4 3.5.4.- GO:0005737 ... Q8LPL7 31318636
    2798 6ive:A (2.3) BS02 PO4 ? N/A Q5SH51 30895492
    2799 6ive:A (2.3) BS03 PO4 ? N/A Q5SH51 30895492
    2800 6ive:B (2.3) BS01 PO4 ? N/A Q5SH51 30895492
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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