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BioLiP
Download all results in tab-seperated text for 3495 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 4h5w:B (1.94) BS02 PO4 3.6.4.10 GO:0005524 ... P11142 25433210
    1802 4he0:A (2.69) BS01 PO4 3.1.3.11 GO:0005515 ... O00757 24086250
    1803 4he1:A (2.23) BS02 PO4 3.1.3.11 GO:0005515 ... O00757 24086250
    1804 4hjq:A (1.8013) BS01 PO4 3.1.3.48 GO:0004725 ... P29350 23514039
    1805 4hjq:B (1.8013) BS01 PO4 3.1.3.48 GO:0004725 ... P29350 23514039
    1806 4i3t:A (2.1) BS01 PO4 1.2.1.- GO:0000166 ... Q92UV7 24361046
    1807 4i3t:B (2.1) BS01 PO4 1.2.1.- GO:0000166 ... Q92UV7 24361046
    1808 4i3t:C (2.1) BS01 PO4 1.2.1.- GO:0000166 ... Q92UV7 24361046
    1809 4i3t:D (2.1) BS01 PO4 1.2.1.- GO:0000166 ... Q92UV7 24361046
    1810 4i3t:E (2.1) BS01 PO4 1.2.1.- GO:0000166 ... Q92UV7 24361046
    1811 4i3t:F (2.1) BS01 PO4 1.2.1.- GO:0000166 ... Q92UV7 24361046
    1812 4i3t:G (2.1) BS01 PO4 1.2.1.- GO:0000166 ... Q92UV7 24361046
    1813 4i3t:H (2.1) BS01 PO4 1.2.1.- GO:0000166 ... Q92UV7 24361046
    1814 4i3y:A (2.04) BS01 PO4 N/A N/A N/A 25263816
    1815 4i3y:B (2.04) BS02 PO4 N/A N/A N/A 25263816
    1816 4i40:A (2.5) BS02 PO4 N/A N/A N/A 25263816
    1817 4i40:B (2.5) BS02 PO4 N/A N/A N/A 25263816
    1818 4i5w:A (2.793) BS01 PO4 2.7.7.5
    2.7.7.53
    GO:0003877 ... P22108 23628156
    1819 4ick:B (2.1) BS01 PO4 3.6.1.17 GO:0004081 ... P50583 23384440
    1820 4ihq:A (2.0) BS02 PO4 3.6.1.4 GO:0005515 ... Q4J9L0 23416110
    1821 4ijx:B (2.1) BS01 PO4 3.6.1.17 GO:0004081 ... P50583 23384440
    1822 4jd0:A (1.8) BS02 PO4 N/A GO:0009058 ... N/A 23999304
    1823 4jd0:A (1.8) BS03 PO4 N/A GO:0009058 ... N/A 23999304
    1824 4jd0:A (1.8) BS04 PO4 N/A GO:0009058 ... N/A 23999304
    1825 4jdg:A (2.74) BS04 PO4 3.1.30.1 GO:0000014 ... Q0KFV0 26527269
    1826 4jej:A (1.52) BS02 PO4 2.5.1.41 GO:0000107 ... A5FJK8 24684232
    1827 4js1:A (2.09) BS02 PO4 2.4.3.1 GO:0006486 ... P15907 23999306
    1828 4kbp:A (2.7) BS03 PO4 3.1.3.2 GO:0003993 ... P80366 8683579
    1829 4kbp:B (2.7) BS03 PO4 3.1.3.2 GO:0003993 ... P80366 8683579
    1830 4kbp:C (2.7) BS03 PO4 3.1.3.2 GO:0003993 ... P80366 8683579
    1831 4kbp:D (2.7) BS03 PO4 3.1.3.2 GO:0003993 ... P80366 8683579
    1832 4kbr:A (2.547) BS01 PO4 ? GO:0005543 ... Q8BS40 23863933
    1833 4kbr:B (2.547) BS01 PO4 ? GO:0005543 ... Q8BS40 23863933
    1834 4kbr:C (2.547) BS01 PO4 ? GO:0005543 ... Q8BS40 23863933
    1835 4kbr:D (2.547) BS01 PO4 ? GO:0005543 ... Q8BS40 23863933
    1836 4kbr:F (2.547) BS01 PO4 ? GO:0005543 ... Q8BS40 23863933
    1837 4kbr:G (2.547) BS01 PO4 ? GO:0005543 ... Q8BS40 23863933
    1838 4kbr:H (2.547) BS01 PO4 ? GO:0005543 ... Q8BS40 23863933
    1839 4km4:A (2.8) BS01 PO4 3.1.3.1 GO:0000287 ... P00634 23843744
    1840 4km4:B (2.8) BS01 PO4 3.1.3.1 GO:0000287 ... P00634 23843744
    1841 4kmi:A (1.8) BS01 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    1842 4kmi:A (1.8) BS02 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    1843 4kmi:A (1.8) BS03 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    1844 4kmi:B (1.8) BS01 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    1845 4kmi:B (1.8) BS02 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    1846 4kmi:B (1.8) BS03 PO4 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    1847 4knv:A (1.993) BS01 PO4 3.1.3.29 GO:0005575 ... Q8TBE9 23747226
    1848 4knv:B (1.993) BS01 PO4 3.1.3.29 GO:0005575 ... Q8TBE9 23747226
    1849 4kpc:A (2.7) BS01 PO4 2.7.4.6 GO:0004550 ... A4HKT8 25643978
    1850 4kpc:B (2.7) BS01 PO4 2.7.4.6 GO:0004550 ... A4HKT8 25643978
    1851 4kqg:A (1.9) BS01 PO4 2.4.2.21 GO:0000166 ... Q05603 24121107
    1852 4kt8:A (2.4) BS01 PO4 2.5.1.153 GO:0016102 ... P9WJ61 24475925
    1853 4kt8:A (2.4) BS02 PO4 2.5.1.153 GO:0016102 ... P9WJ61 24475925
    1854 4kyr:A (2.3) BS10 PO4 3.1.3.- GO:0006470 ... Q9SRK5 23832589
    1855 4l57:A (1.08) BS02 PO4 3.1.3.- GO:0000166 ... Q8TCD5 24531480
    1856 4l57:B (1.08) BS02 PO4 3.1.3.- GO:0000166 ... Q8TCD5 24531480
    1857 4l6a:A (1.4) BS02 PO4 3.1.3.- GO:0008253 ... Q9NPB1 24531480
    1858 4lfv:F (2.0) BS02 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 24598914
    1859 4lfv:F (2.0) BS03 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 24598914
    1860 4lhc:A (1.899) BS07 PO4 1.4.4.2 GO:0004375 ... P74416 24121504
    1861 4lhc:B (1.899) BS03 PO4 1.4.4.2 GO:0004375 ... P74416 24121504
    1862 4lhc:B (1.899) BS04 PO4 1.4.4.2 GO:0004375 ... P74416 24121504
    1863 4lhd:A (1.7959) BS07 PO4 1.4.4.2 GO:0004375 ... P74416 24121504
    1864 4lhd:B (1.7959) BS03 PO4 1.4.4.2 GO:0004375 ... P74416 24121504
    1865 4lix:A (1.548) BS02 PO4 5.5.1.13 GO:0000287 ... Q38802 24036329
    1866 4lph:F (2.3) BS01 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 24911527
    1867 4lvq:A (2.3) BS01 PO4 ? GO:0035435 ... P9WGT7 24615888
    1868 4lvq:B (2.3) BS01 PO4 ? GO:0035435 ... P9WGT7 24615888
    1869 4lzj:C (2.405) BS02 PO4 4.2.1.126 GO:0006040 ... P44862 24251551
    1870 4lzj:D (2.405) BS01 PO4 4.2.1.126 GO:0006040 ... P44862 24251551
    1871 4m1v:A (1.3) BS01 PO4 ? GO:0005576 ... P85173 24490136
    1872 4m2l:A (2.149) BS01 PO4 3.6.5.3 GO:0000049 ... Q980A5 24598735
    1873 4m2l:A (2.149) BS02 PO4 3.6.5.3 GO:0000049 ... Q980A5 24598735
    1874 4mbb:A (1.849) BS02 PO4 3.1.3.- GO:0006470 ... O75319 24447265
    1875 4mbu:A (2.15) BS01 PO4 ? GO:0016740 ... A0A0H3JXG2 25118709
    1876 4mbu:B (2.15) BS01 PO4 ? GO:0016740 ... A0A0H3JXG2 25118709
    1877 4mpo:A (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    1878 4mpo:B (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    1879 4mpo:C (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    1880 4mpo:D (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    1881 4mpo:E (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    1882 4mpo:F (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    1883 4mpo:G (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    1884 4mpo:H (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    1885 4mrn:A (2.5) BS01 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1886 4mrn:B (2.5) BS01 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1887 4mrn:B (2.5) BS02 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1888 4mrp:A (2.5) BS02 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1889 4mrp:B (2.5) BS03 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1890 4mrr:A (2.97) BS01 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1891 4mrr:A (2.97) BS02 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1892 4mrr:B (2.97) BS01 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1893 4mrr:B (2.97) BS02 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1894 4mrs:A (2.35) BS02 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1895 4mrs:B (2.35) BS03 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1896 4mrv:A (2.5) BS02 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1897 4mrv:A (2.5) BS03 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1898 4mrv:B (2.5) BS02 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1899 4mrv:B (2.5) BS03 PO4 7.-.-.- GO:0005524 ... Q2G506 24604198
    1900 4mum:A (1.271) BS02 PO4 3.1.3.- GO:0008253 ... Q9NPB1 24506201
    1901 4mv1:A (1.91) BS01 PO4 6.3.4.14 GO:0003824 ... P43873 26020841
    1902 4mv8:A (2.06) BS01 PO4 6.3.4.14 GO:0003824 ... P43873 26020841
    1903 4mvj:A (2.85) BS01 PO4 N/A GO:0006006 ... N/A 24756028
    1904 4mvj:B (2.85) BS01 PO4 N/A GO:0006006 ... N/A 24756028
    1905 4mvj:D (2.85) BS02 PO4 N/A GO:0006006 ... N/A 24756028
    1906 4mvj:L (2.85) BS01 PO4 N/A GO:0006006 ... N/A 24756028
    1907 4n1z:F (2.35) BS01 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 25411474
    1908 4n1z:F (2.35) BS04 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 25411474
    1909 4ngg:A (2.6) BS02 PO4 3.1.26.3 GO:0003723 ... Q9UPY3 24486018
    1910 4nk1:A (2.21) BS02 PO4 ? GO:0019825 ... B3DVC3 24733432
    1911 4nk1:B (2.21) BS02 PO4 ? GO:0019825 ... B3DVC3 24733432
    1912 4nyh:A (1.2) BS01 PO4 3.1.3.- GO:0006470 ... O75319 24447265
    1913 4nyh:B (1.2) BS01 PO4 3.1.3.- GO:0006470 ... O75319 24447265
    1914 4nyh:C (1.2) BS01 PO4 3.1.3.- GO:0006470 ... O75319 24447265
    1915 4nyt:C (2.25) BS02 PO4 ? N/A Q15485 25344472
    1916 4o13:A (1.75) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1917 4o13:A (1.75) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1918 4o13:B (1.75) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1919 4o13:B (1.75) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1920 4o14:A (1.871) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1921 4o14:B (1.871) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1922 4o15:A (1.8) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1923 4o15:A (1.8) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1924 4o15:B (1.8) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1925 4o15:B (1.8) BS04 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1926 4o16:A (1.783) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1927 4o17:A (1.82) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1928 4o17:B (1.82) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1929 4o18:A (1.92) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1930 4o18:A (1.92) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1931 4o18:B (1.92) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1932 4o18:B (1.92) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1933 4o19:A (1.75) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1934 4o19:B (1.75) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1935 4o1a:A (1.87) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1936 4o1a:A (1.87) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1937 4o1a:B (1.87) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1938 4o1a:B (1.87) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1939 4o1b:A (1.65) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1940 4o1b:A (1.65) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1941 4o1b:B (1.65) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1942 4o1b:B (1.65) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1943 4o1c:A (2.092) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1944 4o1c:B (2.092) BS01 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1945 4o1d:A (1.705) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1946 4o1d:A (1.705) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1947 4o1d:B (1.705) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1948 4o1d:B (1.705) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1949 4o28:A (2.0) BS02 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1950 4o28:A (2.0) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1951 4o28:B (2.0) BS03 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1952 4o28:B (2.0) BS04 PO4 2.4.2.12 GO:0005125 ... P43490 25285661
    1953 4o4f:A (1.7) BS03 PO4 2.7.-.- GO:0000828 ... N9UNA8 24956979
    1954 4o7i:A (2.11) BS02 PO4 3.1.3.57
    3.1.3.7
    GO:0000103 ... C4M4T9 25004978
    1955 4omb:A (1.5) BS01 PO4 N/A GO:0042301 ... N/A 25223609
    1956 4omb:B (1.5) BS01 PO4 N/A GO:0042301 ... N/A 25223609
    1957 4omb:C (1.5) BS01 PO4 N/A GO:0042301 ... N/A 25223609
    1958 4omb:D (1.5) BS01 PO4 N/A GO:0042301 ... N/A 25223609
    1959 4p6d:A (1.59) BS01 PO4 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    1960 4p6d:B (1.59) BS01 PO4 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    1961 4pfp:A (2.32) BS03 PO4 ? GO:0003774 ... F1RQI7 25936506
    1962 4pfp:A (2.32) BS04 PO4 ? GO:0003774 ... F1RQI7 25936506
    1963 4pfp:C (2.32) BS02 PO4 ? GO:0003774 ... F1RQI7 25936506
    1964 4pjj:A (2.4) BS03 PO4 ? GO:0003774 ... F1RQI7 25936506
    1965 4pjj:A (2.4) BS04 PO4 ? GO:0003774 ... F1RQI7 25936506
    1966 4pjk:A (2.15) BS03 PO4 3.6.4.1 GO:0003774 ... P08799 25936506
    1967 4pjk:A (2.15) BS04 PO4 3.6.4.1 GO:0003774 ... P08799 25936506
    1968 4pjm:A (2.05) BS01 PO4 ? GO:0003774 ... F1RQI7 25936506
    1969 4pjn:A (2.0) BS01 PO4 ? GO:0003774 ... F1RQI7 25936506
    1970 4pk4:A (2.78) BS03 PO4 ? GO:0003774 ... F1RQI7 25936506
    1971 4poc:B (1.601) BS01 PO4 4.2.3.3
    5.3.1.1
    GO:0004807 ... P60174 25463631
    1972 4pod:B (1.99) BS01 PO4 4.2.3.3
    5.3.1.1
    GO:0004807 ... P60174 25463631
    1973 4prx:A (1.8) BS02 PO4 5.6.2.2 GO:0003677 ... P0AES6 25202966
    1974 4ptk:A (2.503) BS01 PO4 N/A N/A N/A 25263816
    1975 4ptk:B (2.503) BS02 PO4 N/A N/A N/A 25263816
    1976 4pty:A (2.1) BS01 PO4 1.5.1.38 GO:0005515 ... P80644 24816272
    1977 4pty:B (2.1) BS01 PO4 1.5.1.38 GO:0005515 ... P80644 24816272
    1978 4pu0:A (2.3018) BS02 PO4 1.5.1.38 GO:0005515 ... P80644 24816272
    1979 4pza:A (1.776) BS01 PO4 3.1.3.70
    3.1.3.85
    GO:0003824 ... P9WIC6 24914210
    1980 4pza:B (1.776) BS01 PO4 3.1.3.70
    3.1.3.85
    GO:0003824 ... P9WIC6 24914210
    1981 4q6r:B (2.4) BS02 PO4 4.1.2.27 GO:0016830 ... O95470 24809814
    1982 4q8r:A (1.65) BS01 PO4 ? GO:0005886 ... A0A0H2YSI2 25338617
    1983 4qnk:A (1.75) BS03 PO4 4.2.1.19 GO:0000105 ... O23346 26095028
    1984 4qnk:B (1.75) BS03 PO4 4.2.1.19 GO:0000105 ... O23346 26095028
    1985 4qnk:C (1.75) BS03 PO4 4.2.1.19 GO:0000105 ... O23346 26095028
    1986 4qnk:D (1.75) BS03 PO4 4.2.1.19 GO:0000105 ... O23346 26095028
    1987 4qnk:E (1.75) BS03 PO4 4.2.1.19 GO:0000105 ... O23346 26095028
    1988 4qnk:F (1.75) BS03 PO4 4.2.1.19 GO:0000105 ... O23346 26095028
    1989 4qnk:G (1.75) BS03 PO4 4.2.1.19 GO:0000105 ... O23346 26095028
    1990 4qnk:H (1.75) BS03 PO4 4.2.1.19 GO:0000105 ... O23346 26095028
    1991 4qxd:A (2.55) BS01 PO4 3.1.3.57
    3.1.3.7
    GO:0000287 ... C4M633 25372691
    1992 4qxd:B (2.55) BS03 PO4 3.1.3.57
    3.1.3.7
    GO:0000287 ... C4M633 25372691
    1993 4qxs:F (1.9) BS01 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 25630225
    1994 4r0s:A (2.03) BS01 PO4 3.1.3.16
    3.1.3.48
    GO:0016311 ... Q9HXC7 25909591
    1995 4r0s:B (2.03) BS01 PO4 3.1.3.16
    3.1.3.48
    GO:0016311 ... Q9HXC7 25909591
    1996 4r2j:A (2.36) BS02 PO4 ? GO:0005737 ... Q8ZP84 25600413
    1997 4r7x:A (2.61) BS01 PO4 ? N/A Q96B67 25220262
    1998 4r7x:A (2.61) BS02 PO4 ? N/A Q96B67 25220262
    1999 4r7x:A (2.61) BS03 PO4 ? N/A Q96B67 25220262
    2000 4r7x:A (2.61) BS04 PO4 ? N/A Q96B67 25220262

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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