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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2a3c:A (2.07) BS01 PNX 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: Kd=43uM
    PDBbind: -logKd/Ki=4.43, Ki=37uM
    BindingDB: Kd=43000nM, Ki=37000nM, IC50=126000nM
    2 2a3c:A (2.07) BS02 PNX 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: Kd=43uM
    PDBbind: -logKd/Ki=4.43, Ki=37uM
    BindingDB: Kd=43000nM, Ki=37000nM, IC50=126000nM
    3 2a3c:B (2.07) BS01 PNX 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: Kd=43uM
    BindingDB: Kd=43000nM, Ki=37000nM, IC50=126000nM
    4 2a3c:B (2.07) BS02 PNX 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: Kd=43uM
    BindingDB: Kd=43000nM, Ki=37000nM, IC50=126000nM
    5 3arr:A (1.65) BS01 PNX 3.2.1.14 GO:0004553 ... Q9AMP1 21531720 PDBbind: -logKd/Ki=5.40, Kd=4.0uM
    6 3arr:A (1.65) BS02 PNX 3.2.1.14 GO:0004553 ... Q9AMP1 21531720 PDBbind: -logKd/Ki=5.40, Kd=4.0uM
    7 3aru:A (1.9) BS01 PNX 3.2.1.14 GO:0004553 ... Q9AMP1 21531720 PDBbind: -logKd/Ki=3.22, Kd=600uM
    8 3aru:A (1.9) BS02 PNX 3.2.1.14 GO:0004553 ... Q9AMP1 21531720 PDBbind: -logKd/Ki=3.22, Kd=600uM
    9 3aru:A (1.9) BS03 PNX 3.2.1.14 GO:0004553 ... Q9AMP1 21531720 PDBbind: -logKd/Ki=3.22, Kd=600uM
    10 3tvx:A (2.84) BS03 PNX 3.1.4.53 GO:0004114 ... P27815 22223051 PDBbind: -logKd/Ki=4.14, Ki=72uM
    BindingDB: IC50=168000nM
    11 3tvx:B (2.84) BS02 PNX 3.1.4.53 GO:0004114 ... P27815 22223051 BindingDB: IC50=168000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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