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BioLiP
Download all results in tab-seperated text for 220 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8ahq:C (2.1) BS01 PNS ? GO:0031177 ... A4PHN0 36899003
    202 8ahq:D (2.1) BS01 PNS ? GO:0031177 ... A4PHN0 36899003
    203 8aig:A (-1.00) BS01 PNS ? N/A A4PHM4 36899003
    204 8cuy:A (2.4) BS01 PNS 2.3.1.94 GO:0004312 ... I7FMV0 36782050
    205 8i8e:A (2.63) BS02 PNS ? N/A Q00IB3 N/A
    206 8i8e:B (2.63) BS02 PNS ? N/A Q00IB3 N/A
    207 8i8e:C (2.63) BS02 PNS ? N/A Q00IB3 N/A
    208 8i8e:D (2.63) BS02 PNS ? N/A Q00IB3 N/A
    209 8i8e:E (2.63) BS02 PNS ? N/A Q00IB3 N/A
    210 8i8e:F (2.63) BS01 PNS ? N/A Q00IB3 N/A
    211 8jbr:A (2.5) BS02 PNS ? GO:0003824 ... A8YJV7 38340732
    212 8k2b:v (3.4) BS01 PNS N/A GO:0000266 ... L0R8F8 38942792
    213 8psf:G (2.8) BS01 PNS 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 37949058
    214 8psj:G (3.4) BS01 PNS 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 37949058
    215 8psm:G (3.1) BS01 PNS 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 37949058
    216 8psp:G (2.9) BS01 PNS 1.3.1.9
    2.3.1.38
    2.3.1.39
    2.3.1.86
    3.1.2.14
    4.2.1.59    		 GO:0004312 ... P07149 37949058
    217 8qu5:v (2.42) BS01 PNS N/A GO:0000266 ... L0R8F8 38969660
    218 8qu5:w (2.42) BS01 PNS N/A GO:0000035 ... O14561 38969660
    219 8w2d:A (2.7) BS01 PNS N/A N/A A0A1I9RH13 38908753
    220 8w2d:B (2.7) BS01 PNS N/A N/A A0A1I9RH13 38908753
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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